Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02934 ATGCAGACATCCTACAACGAGCCACGCCTTCTCATTCTAACTGATTCAAGAACAGATCATCAGCCCATTATGGAAGGAGCTCTTGGAAATATACCAACTATTGCTTTTTGTGACACTGATTCTCCAATGTGGCATGTTGATGTTGGGATTCCTTCTAATAACAAGGAACACATAGCATTGGTTGTCTCTTTTGGCTATTAG 201 0.408 MQTSYNEPRLLILTDSRTDHQPIMEGALGNIPTIAFCDTDSPMWHVDVGIPSNNKEHIALVVSFGY. 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02934 66 Pfam Ribosomal protein S2 4 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca9g02934 66 ProSitePatterns Ribosomal protein S2 signature 2. 8 32 IPR018130 GO:0003735|GO:0005840|GO:0006412
Seca9g02934 66 PANTHER 40S RIBOSOMAL PROTEIN SA 1 60 IPR005707 GO:0003735|GO:0006412|GO:0015935
Seca9g02934 66 Gene3D - 1 65 - -
Seca9g02934 66 PRINTS Ribosomal protein S2 signature 25 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca9g02934 66 PRINTS Ribosomal protein S2 signature 8 25 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca9g02934 66 PRINTS Ribosomal protein S2 signature 46 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Seca9g02934 66 SUPERFAMILY Ribosomal protein S2 2 59 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02934 Seca-Chr9 42781521 42781900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02934 1 55 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 85.455 5.97e-31 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02934 K02998 - gmx:100786575 104.375