Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02926 ATGAATTCCGTCCATCTCCTCCTTTCTCTGTTTCTGCTGGTTGCATTTCTCATCCCCCACACGGTTTGTGGAAATGCAGAGCTCAGAGCTCTGATGGACTTGAAGTCCTCTCTGGACCCAGAGGGCAAGATCCTTAGCTCGTGGATCAGTGATGGTGACCCATGCAGTGGCTTGTTCGAAGGGATTGCGTGCAACGAGCACAGAAAAGTGGCCAACATCTCCTTGCAAGGAAAGGGCCTTTCTGGCTGGTTATCTCCAGCTGTGGCTGAACTCAAATGCTTGTCAGGCTTATACTTGCATTACAATAATCTTTCTGGTGAGATACCCCCTCAGATTTCAAATCTCACTGATCTGGTCGATCTCTATCTCGACGTGAATAGTCTTTCTGGAACCATTCCTCCTGAGGTCGGCAAGATGGCTAGTCTCCAGGGAAATATACCCACACAGATGGGTTCCTTGAAGCAGCTTAGTACTCTTGCTTTGCAATATAATAAGTTAACTGGTCAAATTCCTCTTAGCTTGGGGAACTTGGAGAAGTTAAACAGACTAAATTTGAGCTTCAATAACTTCAGCGGTGCCATTCCAGCAACACTAGCCCGTATTGCAAACTTGGAAGTTCTAGATATTCAAAACAATTCTCTATCGGGTATTGTTCCTTCTGATTTTTCTTCGCATTTCTCTTTGTGCATTTTAGTGAAAATCCTAATTAACGTTTTAAAAAATGAAAATGAAGCATTGAAGAGACTTGGGGAAGGATTCCAAGCTGCAAACAACCCAAGCTTATGTGGAGTTGGGTTTTCCACTTTGAGAGCTTGCAACAAAGATCAAGATTTAAACGTTAACCATATTGATAAATCAGATCAAGACCTACCCCAAAAAAGTAATCCTGGAAAGGCTCTCCCGGAGCCTGCAAATATCCAGTTGCCTTGTAGCCAGACTCACTGCTCAAAATCAAGAAGGTTTCCTCAAGCTGTCATCACAGCAGGTGTTATAAGTATCATTCTCACATTCATAGGTGCTGGATTTTTTATATTTGTCAGATACCGCCGTCAAAAGCAGAGGATTACATCAAATTCTTCTGAAGGGAAACTTGGTCCTGACCAGCCTAAAGAGTTCTACAGAAAAAGTCCATCTGCACTTGTTAATCTTGACTATTATAATGGATGGTATCCATTGTCTGATGATCAAAATACTGGTGGATTATCCAATGAATATCTAAACCAATTCAGATTTAATGTAGATGAGGTTGAATCTGCAACACAGTATCTTTCGGAAGCCAATTTATTGGGTAAGAGCAAATTCTCAGCAGTTTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTGGCTATTAGAAGCATTAATGTGACATGCTGCAAGACTGAGGAAGCTGAATTTGTAAAGGGGTTGAGTTTACTAACCTCACTGAGACATGAAAACCTTGTCAAGCTGAGAGGTTTCTGCTGCTCAAGGAGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACAATGGGTGACCTGTCTCAATATCTTGACAATGAAGATGGAAGTGGTTATGTGCTTGAGTGGTCCAAGAGGGTTTCTATCATCAAGGGCATTGCAAAGGGTATTGGATATCTGCACAGCAATGAAGCAAACAAACCTACAATAGTACACCAGAATATTTCGGTTGAAAATGTTCTCCTTGACCATCAGTTTAACCCATTGATCATGGATGCTGGACTCCCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTAAAAGTAAGTGCTGCCATGGGATACCTAGCTCCCGAATACATTACTACTGGACGCTTTACTGAGAAGAGCGACATATACGCATTTGGGGTTATTTTGCTTCAAGTTCTATCCGGCAAGAAGGCAATAGGTGGTTCAATTCGGATGGCAGTTGAGTCTTCAAGATTTGATGATTTTGTTGACACAAATCTTGAGGGAAGATATTCTAAATCTGAAGCAGCAACGCTTTCAAAGCTTGCAATGCTATGTATCCATGAGCTTCCTGACCAAAGACCAACCATGGTGGATGTGATTCAGGAGCTTAGTGTGTTTCCTGCTCATTCGTAA 2088 0.4191 MNSVHLLLSLFLLVAFLIPHTVCGNAELRALMDLKSSLDPEGKILSSWISDGDPCSGLFEGIACNEHRKVANISLQGKGLSGWLSPAVAELKCLSGLYLHYNNLSGEIPPQISNLTDLVDLYLDVNSLSGTIPPEVGKMASLQGNIPTQMGSLKQLSTLALQYNKLTGQIPLSLGNLEKLNRLNLSFNNFSGAIPATLARIANLEVLDIQNNSLSGIVPSDFSSHFSLCILVKILINVLKNENEALKRLGEGFQAANNPSLCGVGFSTLRACNKDQDLNVNHIDKSDQDLPQKSNPGKALPEPANIQLPCSQTHCSKSRRFPQAVITAGVISIILTFIGAGFFIFVRYRRQKQRITSNSSEGKLGPDQPKEFYRKSPSALVNLDYYNGWYPLSDDQNTGGLSNEYLNQFRFNVDEVESATQYLSEANLLGKSKFSAVYKGVLRDGSLVAIRSINVTCCKTEEAEFVKGLSLLTSLRHENLVKLRGFCCSRSRGECFLIYDFATMGDLSQYLDNEDGSGYVLEWSKRVSIIKGIAKGIGYLHSNEANKPTIVHQNISVENVLLDHQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVILLQVLSGKKAIGGSIRMAVESSRFDDFVDTNLEGRYSKSEAATLSKLAMLCIHELPDQRPTMVDVIQELSVFPAHS. 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02926 695 FunFam Protein NSP-INTERACTING KINASE 2 24 162 - -
Seca9g02926 695 Gene3D Ribonuclease Inhibitor 142 236 IPR032675 -
Seca9g02926 695 Pfam Leucine rich repeat 155 214 IPR001611 GO:0005515
Seca9g02926 695 MobiDBLite consensus disorder prediction 283 303 - -
Seca9g02926 695 Pfam Protein tyrosine and serine/threonine kinase 427 688 IPR001245 GO:0004672|GO:0006468
Seca9g02926 695 Gene3D Transferase(Phosphotransferase) domain 1 503 691 - -
Seca9g02926 695 SUPERFAMILY Protein kinase-like (PK-like) 398 689 IPR011009 -
Seca9g02926 695 FunFam Protein NSP-INTERACTING KINASE 2 502 692 - -
Seca9g02926 695 ProSiteProfiles Protein kinase domain profile. 423 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02926 695 Gene3D Ribonuclease Inhibitor 24 141 IPR032675 -
Seca9g02926 695 PANTHER LEUCINE RICH REPEAT KINASE 2 64 142 - -
Seca9g02926 695 CDD STKc_IRAK 429 688 - -
Seca9g02926 695 Gene3D Phosphorylase Kinase; domain 1 393 501 - -
Seca9g02926 695 ProSiteProfiles Leucine-rich repeat profile. 203 224 IPR001611 GO:0005515
Seca9g02926 695 FunFam Protein NSP-INTERACTING KINASE 2 394 501 - -
Seca9g02926 695 SUPERFAMILY L domain-like 23 231 - -
Seca9g02926 695 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02926 Seca-Chr9 42718167 42722134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02926 6 536 Miscellaneous Gene Families AT4G22730 54.446 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Seca9g02926 PK_Tyr_Ser-Thr 2.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02926 - - gmx:100777169 1100.12