Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02924 ATGGGTCGTATGCACAGTCGTGGGTTGGTGCCACTGCAACCTCTTTCTTTCGCTGCGCTTTCAATTCCATTTTGTTCTCTTTCTTACGATTACGTTCTGTTTTTCTTGTTTGGTTGCAGTAAGGGGATATCCTCCTCCGCTTTGCCATACAAGAGGACTCCGCCTAGTTGGCTCAAGATCTCTTCCCAAGATGTTGAAGAGAATATGTGCAAGTTCGCGAAGAAGGGTTTGACGCCATCTCAAATTGGTGTCATTCTCCGAGATTCTCATGGCATTGCTCAGGTCAAGAGCGTCACTGGCAGCAAAATCCTCCGCATCCTCAAAGCTCATGGACTTGCGCCCGAGATTCCGGAGGATCTGTACCATTTAATAAAGAAGGCGGTTTCAATTCGGAAGCATCTGGAGAGGAACAGAAAGGACAAGGACTCCAAGTTCAGATTGATCCTTGTCGAGAGCAGAATCCACCGACTTGCTCGTTATTACAAGAAAACCAAGAAGCTCCCCCCTGTGTGGAAATACGAATCAACAACTGCCAGCACTCTGGTTGCTTAA 552 0.4728 MGRMHSRGLVPLQPLSFAALSIPFCSLSYDYVLFFLFGCSKGISSSALPYKRTPPSWLKISSQDVEENMCKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02924 183 FunFam 40S ribosomal protein S13 115 183 - -
Seca9g02924 183 Hamap 30S ribosomal protein S15 [rpsO]. 3 181 IPR023029 -
Seca9g02924 183 SMART Ribosomal_S15_2 102 181 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca9g02924 183 SMART Ribosomal_S13_N_2 36 92 IPR012606 GO:0003735|GO:0005840|GO:0006412
Seca9g02924 183 Gene3D - 67 114 - -
Seca9g02924 183 FunFam 40S ribosomal protein S13 67 114 - -
Seca9g02924 183 Gene3D - 115 183 - -
Seca9g02924 183 ProSitePatterns Ribosomal protein S15 signature. 130 160 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca9g02924 183 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 183 IPR023029 -
Seca9g02924 183 CDD Ribosomal_S15p_S13e 102 175 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca9g02924 183 SUPERFAMILY S15/NS1 RNA-binding domain 98 174 IPR009068 -
Seca9g02924 183 Pfam Ribosomal S13/S15 N-terminal domain 40 92 IPR012606 GO:0003735|GO:0005840|GO:0006412
Seca9g02924 183 Pfam Ribosomal protein S15 106 176 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02924 Seca-Chr9 42698444 42701091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02924 1 183 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 77.049 8.04e-96 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02924 K02953 - egr:104442247 282.722