Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02921 ATGGGGAGACAACCTTGCTGTGACAAACTTGGGGTGAAGAAAGGACCATGGACTGCGGAAGAAGATAAGAAACTTATCAACTTCATTCTCACCAATGGCCACTGCTGTTGGAGAGCTGTGCCAAAACTTGCTGGCCTTCGACGTTGTGGTAAGAGTTGTCGTCTTCGTTGGACTAATTATCTTCGACCTGACTTGAAAAGAGGCCTCCTCACAGAAGCAGAAGAGCAATTGGTTATCGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGGACAGACAATGAGATTAAAAATCACTGGAACACCCACATCAAGAAGAAGCTCCTCAAGATGGGTATTGATCCTGTTACTCATGAACCTCTTAATAAACAAGCCTCATCCCAGGATAGTTCATCCCCTTCAGAGCATTTGCCACAAGCTGGTAATAGCCATGAGGTTAAGGAAAATGATGGAGTCTTCTTCAACTCAGAAGAGAATTCAAGCTCATCACCAGCTGAAAATTCTTCTGGGGAAGAGTCCCTTTTATTGGATAGCATTTGCAGCGATGACTCTCTAATGAACAACTTATGGCTGGATGAAACTCCACTAATGGATGCATTTTGGGACAGTACACCTAAAGTAGAGAATACAAATAATGACTTGAGTTTGCCATCTTGGGAGGACACCTGTGCTTGGTTGTTGGACTGCCAGGACTTTGGTGTTCATGATTTTGGTCTTAATTGTTTCAATGAGATTGAGTCAAATGCACCACAAACTATAGGAATGGAAGAAAAAGAACATTAG 807 0.4362 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQASSQDSSSPSEHLPQAGNSHEVKENDGVFFNSEENSSSSPAENSSGEESLLLDSICSDDSLMNNLWLDETPLMDAFWDSTPKVENTNNDLSLPSWEDTCAWLLDCQDFGVHDFGLNCFNEIESNAPQTIGMEEKEH. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02921 268 SMART sant 66 114 IPR001005 -
Seca9g02921 268 SMART sant 13 63 IPR001005 -
Seca9g02921 268 CDD SANT 16 61 IPR001005 -
Seca9g02921 268 FunFam MYB transcription factor 11 67 - -
Seca9g02921 268 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 206 - -
Seca9g02921 268 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca9g02921 268 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca9g02921 268 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Seca9g02921 268 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca9g02921 268 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca9g02921 268 MobiDBLite consensus disorder prediction 128 147 - -
Seca9g02921 268 MobiDBLite consensus disorder prediction 126 151 - -
Seca9g02921 268 FunFam MYB transcription factor 70 146 - -
Seca9g02921 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca9g02921 268 CDD SANT 71 112 IPR001005 -
Seca9g02921 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca9g02921 268 Gene3D - 71 147 - -
Seca9g02921 268 Gene3D - 12 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02921 Seca-Chr9 42680156 42681993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02921 1 247 MYB Transcription Factor Family AT4G22680 61.798 9.77e-102 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g02921 Myb_DNA-binding 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02921 K09422 - gmx:100786965 454.907