Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02912 ATGGCAGACGAAGCAAAAGCTAAAGGCAACGCAGCATTCTCTTCCGGCGACTTTGACGCCGCCATCCGTCACTTCTCGGATGCCATCGCTCTCTCCCCTGACAACCATGTCCTCTATTCCAACCGATCCGCCGCTTACGCTTCCCTCCAAAAGTACACAGAGGCCTTAACTGACGCCAGAAAGACCGTCGAACTCAAGCCTGATTGGTCCAAGGGCTACAGCCGTCTCGGCGCTGCTCATCTTGGCCTCGCCCAATACGACGACGCCGTTTCGGCTTACAAAAAGGGCCTTGAAATTGACCCCAATAATGAACCCCTCAAATCCGGTTTAGCTGATGCCCAGGCTCGTGCTGCGTCAGCTTCCAGGCCACGCTCTGCAAATCCCTTCGGTGACGCTTTCTCAGGCCCAGAGATGTGGGCCAGGCTCACCGCTGACCCTACCACTAGGGCTTACCTTCAACAACCAGATTTCGTGCAGATGATGCAGGATATTCAGAAAAACCCCAGCAATCTCAATTTGTATTTGAAAGATCAAAGAGTCATGCAAGCCATCGGGGTTTTGCTCAACGTGAAGATTCGAACCCCGAACGACGACACTGATTTGCCCGAGTCTCCTTCGCCTTCAGCGTCCGAGAGGAAGAGAGCTGCTGAAACCGAGCCTGCGAAGCAACCCGAGCCTGAGCCCGAACCAGAACCTGAGCCTATGGAACTGACGGAGGAGGACAGGGACGCAAAGCAGAGGAAGGCTGAGGCTCAGAAGGAAAAGGAGGCGGGAAATGCAGCATATAAGAAGAAGGATTTTGACACCGCAATTCAACATTACTCAAAGGCTTTGGAGCTTGATGATGAGGACATATCGTATCTCACGAACCGCGCTGCCGTTTACTTGGAAATGGGAAAGTATGAGGAATGCATAAAAGACTGTGATAAGGCTGTTGAAAGAGGAAGAGAACTAAGATCAGACTTCAAGATGATAGCAAGAGCTTTGACAAGGAAAGGGAATGCTTTGGTCAAAATGGCAAAATGCTCGAAAGATTATGAACCTGCTATTGAGACTTACCAAAAAGCACTTACAGAGCACCGCAACCCAGACACCTTGAAGAAACTTAATGAAGCTGAAAAGGCAAAGAAAGAGCTAGAACAACAAGAATACTTTGATCCAAAGTTGGCTGATGAAGAGAGAGAAAAAGGAAATGAATTCTTTAAGGAGCAGAAATATCCTGAGGCTGTGAAGCACTACACAGAGTCTATAAGAAGAAACCCAAATGATCCTAGGGCTTATAGTAACAGAGCAGCATGTTACACTAAACTGGGGGCAATGCCTGAGGGTTTAAAGGATGCAGAGAAGTGCCTTGAGCTTGATCCAACATTTGTAAAGGGTTATACCAGGAAAGGTGCGGTTCAGTTTTTCATGAAAGAATATGACAAGGCTTTGGAGACATATAAGGAGGGGTTGAAACATGACCCTAACAACCAGGAGTTGCTTGATGGCATTGGAAGATGTGTGCAACAAATTAATAAGGCCAGTCGTGGAGATTTAAGCCCTGAAGAATTGAAGGAGAGACAGGTATTCTTGCAGGCGAAGGCAATGCAGGACCCAGAGATACAGAACATTCTGCAAGACCCTGTTATGAGACAGGTATTGATTGATTTCCAGGAAAATCCTAAGGCTGCACAGGAACATACGAAGAATCCAATGGTGATGAACAAGATCCAAAAGCTGATCAGTGCTGGAATTGTCCAGATGAGGTAA 1752 0.476 MADEAKAKGNAAFSSGDFDAAIRHFSDAIALSPDNHVLYSNRSAAYASLQKYTEALTDARKTVELKPDWSKGYSRLGAAHLGLAQYDDAVSAYKKGLEIDPNNEPLKSGLADAQARAASASRPRSANPFGDAFSGPEMWARLTADPTTRAYLQQPDFVQMMQDIQKNPSNLNLYLKDQRVMQAIGVLLNVKIRTPNDDTDLPESPSPSASERKRAAETEPAKQPEPEPEPEPEPMELTEEDRDAKQRKAEAQKEKEAGNAAYKKKDFDTAIQHYSKALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGNALVKMAKCSKDYEPAIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKEQKYPEAVKHYTESIRRNPNDPRAYSNRAACYTKLGAMPEGLKDAEKCLELDPTFVKGYTRKGAVQFFMKEYDKALETYKEGLKHDPNNQELLDGIGRCVQQINKASRGDLSPEELKERQVFLQAKAMQDPEIQNILQDPVMRQVLIDFQENPKAAQEHTKNPMVMNKIQKLISAGIVQMR. 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02912 583 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Seca9g02912 583 ProSiteProfiles TPR repeat profile. 251 284 IPR019734 GO:0005515
Seca9g02912 583 Pfam Tetratricopeptide repeat 7 67 - -
Seca9g02912 583 Coils Coil 362 382 - -
Seca9g02912 583 Pfam Tetratricopeptide repeat 459 491 IPR001440 GO:0005515
Seca9g02912 583 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Seca9g02912 583 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 511 583 - -
Seca9g02912 583 FunFam Putative stress-induced-phosphoprotein 1 125 193 - -
Seca9g02912 583 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Seca9g02912 583 SMART tpr_5 2 35 IPR019734 GO:0005515
Seca9g02912 583 SMART tpr_5 390 423 IPR019734 GO:0005515
Seca9g02912 583 SMART tpr_5 70 103 IPR019734 GO:0005515
Seca9g02912 583 SMART tpr_5 36 69 IPR019734 GO:0005515
Seca9g02912 583 SMART tpr_5 326 363 IPR019734 GO:0005515
Seca9g02912 583 SMART tpr_5 458 491 IPR019734 GO:0005515
Seca9g02912 583 SMART tpr_5 251 284 IPR019734 GO:0005515
Seca9g02912 583 SMART tpr_5 424 457 IPR019734 GO:0005515
Seca9g02912 583 SMART tpr_5 285 318 IPR019734 GO:0005515
Seca9g02912 583 Gene3D - 510 583 - -
Seca9g02912 583 Gene3D - 126 192 - -
Seca9g02912 583 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Seca9g02912 583 FunFam Stress-induced phosphoprotein 1 1 116 - -
Seca9g02912 583 MobiDBLite consensus disorder prediction 238 261 - -
Seca9g02912 583 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Seca9g02912 583 MobiDBLite consensus disorder prediction 210 229 - -
Seca9g02912 583 Pfam STI1 domain 136 189 IPR041243 -
Seca9g02912 583 Pfam STI1 domain 525 575 IPR041243 -
Seca9g02912 583 FunFam hsp70-Hsp90 organizing protein 3-like 389 503 - -
Seca9g02912 583 Pfam TPR repeat 397 438 - -
Seca9g02912 583 Pfam TPR repeat 258 299 - -
Seca9g02912 583 Coils Coil 235 255 - -
Seca9g02912 583 ProSiteProfiles TPR repeat profile. 424 457 IPR019734 GO:0005515
Seca9g02912 583 SMART CBM 532 571 IPR006636 -
Seca9g02912 583 SMART CBM 135 174 IPR006636 -
Seca9g02912 583 PANTHER TPR REPEAT CONTAINING PROTEIN 2 555 - -
Seca9g02912 583 MobiDBLite consensus disorder prediction 194 261 - -
Seca9g02912 583 Gene3D Tetratricopeptide repeat domain 389 509 IPR011990 GO:0005515
Seca9g02912 583 Gene3D Tetratricopeptide repeat domain 248 384 IPR011990 GO:0005515
Seca9g02912 583 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Seca9g02912 583 ProSiteProfiles TPR repeat profile. 390 423 IPR019734 GO:0005515
Seca9g02912 583 ProSiteProfiles TPR repeat profile. 458 491 IPR019734 GO:0005515
Seca9g02912 583 SUPERFAMILY TPR-like 8 503 IPR011990 GO:0005515
Seca9g02912 583 FunFam Stress-induced phosphoprotein 1 248 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02912 Seca-Chr9 42635297 42639729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02912 389 501 U-box Gene Family AT3G07370 27.434 8.50e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02912 K09553 - gmx:100816776 971.459