Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02909 ATGAACGCTTTTACACATGTTCCTCCTGGGTTTCGTTTCCATCCCACTGATGAAGAACTTGTTGATTACTACCTTAGGAAAAAGGTAGCTTCTAAAAGGATTGATCTAGATATCATAAAAGATGTAGATCTATACAAAATTGAGCCATGGGATCTTCAAGAATTGTGCAAAATAGGAACGGATGAACAAAGTGATTGGTATTTCTTTAGTCACAAAGATAAGAAGTACCCAACAGGCACCCGTACGAACAGAGCTACAAAGGCGGGATTCTGGAAGGCAACAGGAAGGGACAAGGCAATATACTCAAGCAGTAGACAGCATTCCCTGATTGGCATGAGAAAGACTCTTGTGTTTTACAAAGGAAGAGCCCCAAATGGACAGAAATCTGACTGGATCATGCATGAGTACCGCCTAGAAACTAATGAAAATGGAACTACTTCTCAGGAAGAAGGGTGGGTTGTATGCAGAGTGTTCAAGAAAAGAATCACTACAGTAAGGAAGTATGAGTCATCCCCCGGTTGGTATGATCATGAGCAACTCTCATTCATGCAGCAAGACCTTCAATCTTCTCCATCCCCAAGGGGACTAGTTTCTCATAATTCTCACCCTTATGCATTCAAGCAGGAGTTGGAATTGCAATACCATGACGCTTTCCTCCAACTTCCACAACTAGAAAGCCCCAAAGTTACTAATACTCAATCTTGCAGCCCTTTTGTCCCTTATGCCTATGATAGCAGTAGCAATCACAATGGAAGTATTGCTTTGCAGTCCTCATCACTCACTCAAGAAGAGCACATACAACGTTGCCAGCAATTGCTTTATGGTAGCAAAAGTGTGGACCAAGTGACGGATTGGCGAGTACTTGACAAATTTGTTGCCTCTCAGCTCCAAGATGTTTCCAAGGACACCATTACTTATTCCAATGTGCAGGCTGAGGCTGAACAAATTATTTTGCTAGCAAACGCCTCCTCAAAACAGGAAATTGGGCAGGAATATGCTTCAACCTCCACCTCCAGTTGCCAGATTGATCCCTGGAAGTGA 1041 0.4284 MNAFTHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDIIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSSSRQHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTSQEEGWVVCRVFKKRITTVRKYESSPGWYDHEQLSFMQQDLQSSPSPRGLVSHNSHPYAFKQELELQYHDAFLQLPQLESPKVTNTQSCSPFVPYAYDSSSNHNGSIALQSSSLTQEEHIQRCQQLLYGSKSVDQVTDWRVLDKFVASQLQDVSKDTITYSNVQAEAEQIILLANASSKQEIGQEYASTSTSSCQIDPWK. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02909 346 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Seca9g02909 346 ProSiteProfiles NAC domain profile. 7 160 IPR003441 GO:0003677|GO:0006355
Seca9g02909 346 Pfam No apical meristem (NAM) protein 8 138 IPR003441 GO:0003677|GO:0006355
Seca9g02909 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 249 - -
Seca9g02909 346 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Seca9g02909 346 FunFam NAC domain-containing protein 16 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02909 Seca-Chr9 42609447 42610637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02909 1 346 NAC Transcription Factor Family AT1G12260 56.477 3.40e-131 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca9g02909 NAM 2.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02909 - - gmx:100797916 485.337