Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02906 ATGCATTCTAGTGTATTAACTTATTCGCAGCCAGATTCACCCCTCTCCCCTGGGAAGTATTCAAGAACGAGTTCAAGGAAGAGTCTTGATGATGTTCGTTCCAATGGTTGGTTGGATGCCATGAAGGCCTCTTCACCTCCAAGAAAGAAGTTACTTATTAAAGGTTCAAATTTTCAGGTTGCTTCCATTGACTATGACATTGAAGAATATCGCTCATTCATGGTTGATTATCCTTCAGCATTAGACTCGTTTGAGGAAATTATTGACAGTGCAAAGAATAAAAAGGTTGCAGTGTTTCTGGATTATGATGGCACTCTTTCACCGATAGTAGATGACCCTGACTCTGCCTTTATGTCTGAAGCTATGCGTACCACTGTGAGAAGCGTGGCAAGGTATTTTCCCACGGCAATTATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATCTAGTTAAACTAACGGAACTCTACTATGCTGGTAGCCATGGAATGGACATTATTGGCCCTTTTAGTCACACTCCGTCCAATAACCATCAGGTGAGCATTATGGATCTAGCCCTCTTTGGGAAGGAGATAACTCTCTTTCAACCTGCAAGAGAATTCCTGCCTATGATTGATGAGGTTTTTAGAACCCTCGTCGAGATTACTAAAGATATAAAGGGTGCAAAAGTCGAAAATCACAAGTTTTGCGTTTCTGTACATTACCGTAACGTAGAAGAGAATAATTGGACAACAATTGGACAACGTGTTCATGATATGTTGAAAAATTACCCTCGTTTACGTTCCACCCACGGACGGAAGGTTTTAGAGGTTCGTCCTGTGATTGACTGGAACAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAGGTTTAAATAATGATTGGGATGGTGTGCTTCCTATCTACATTGGAGATGACAAAACCGATGAAGATGCTTTCAAGGTGCTGCGTGAGAGCAATCGAGGTTGTGGGATTTTGGTTTCATCAGTGAAGAAAGAAAGCAGCGCCTTCTACTCTCTCCGAGATCCAACTGAGGTCATGAAATTTCTCCAACTTCTGGTGAATTGGAAGCGGCCAGAATTAGAGAGAAAGTATGGGGAGAAGTAA 1107 0.4164 MHSSVLTYSQPDSPLSPGKYSRTSSRKSLDDVRSNGWLDAMKASSPPRKKLLIKGSNFQVASIDYDIEEYRSFMVDYPSALDSFEEIIDSAKNKKVAVFLDYDGTLSPIVDDPDSAFMSEAMRTTVRSVARYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPFSHTPSNNHQVSIMDLALFGKEITLFQPAREFLPMIDEVFRTLVEITKDIKGAKVENHKFCVSVHYRNVEENNWTTIGQRVHDMLKNYPRLRSTHGRKVLEVRPVIDWNKGKAVEFLLESLGLNNDWDGVLPIYIGDDKTDEDAFKVLRESNRGCGILVSSVKKESSAFYSLRDPTEVMKFLQLLVNWKRPELERKYGEK. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02906 368 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 19 361 IPR044651 GO:0004805|GO:0005992
Seca9g02906 368 NCBIfam HAD-IIB family hydrolase 98 317 IPR006379 -
Seca9g02906 368 CDD HAD_TPP 97 348 - -
Seca9g02906 368 NCBIfam trehalose-phosphatase 94 354 IPR003337 GO:0003824|GO:0005992
Seca9g02906 368 FunFam Trehalose 6-phosphate phosphatase 203 363 - -
Seca9g02906 368 Gene3D - 96 176 IPR023214 -
Seca9g02906 368 Gene3D - 196 365 IPR023214 -
Seca9g02906 368 MobiDBLite consensus disorder prediction 1 27 - -
Seca9g02906 368 FunFam Trehalose 6-phosphate phosphatase 197 273 - -
Seca9g02906 368 MobiDBLite consensus disorder prediction 1 23 - -
Seca9g02906 368 Pfam Trehalose-phosphatase 99 343 IPR003337 GO:0003824|GO:0005992
Seca9g02906 368 SUPERFAMILY HAD-like 97 357 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02906 Seca-Chr9 42579890 42586652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02906 92 353 Trehalose Biosynthesis Gene Families AT1G70290 25.899 7.77e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02906 K01087 - tcc:18606311 505.753