Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02885 ATGGAGGAACAGAACGAAGCACCAGACAATAGAGAACTCTACGCACTTCTGAACTTGTCTCCGGAAGCTTCCGATGAAGAAATCCGCAGAGCTTATCGTCAATGGGCGCAAGTCTATCACCCCGATAAGTACCAAGCTCCTCACATGAAAGATATCGCTACGGAGAACTTTCAACGTGTATGTGAAGCGTATGAGATTTTGTCTGATCCAAATAAAAGGCAAATATATGATATCTATGGCATGGAAGGGTTGACCTCTGGTTTGGAACTTGGTCAAAGGCTTGATAAAGCCGAAGAGATCAAGGCAGAGCTGGAAAGATTGACGAAGATGAGGGAACGGGAAAAAATGGCTGCGCATTTTCGATCTTCGGGTACAATCTTGGCCAATATGTCTTTGCCACACTGTGTAAATGGTGATGGCCTCTTCCGAGGAATGGCTATGTCAAGTGAAATTCAGTCTCAGTTATCAAAGCGTAATGCTGTTACGATTGGTGGCAATTTAGCAGTTGATGGAAATGAAGGTGGTGGAGCCGCTACTGCATTATTGAGGCATCAAATTTCAGAAGTTTCATCAGTGGAATTTGTGGCTTCTGCTGGTTTACGAGCACTAATTGGGGTGCAAACATCTCGCAATCTATCATCACACTCAGCTGCAACAATGGGTATAGCAATGTCTTTGAAAGATGGTTCACTGAATCTTTCAAATTTATGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATGGAACACAGGAATGGTCTGTCTATCATTTCCAAGTTCCAACTGATGAGGACATATATTCTCATTCTGAACTTATACAGCTTACATTGGGACCACAATCAGCTGTAGCTGTAGGGTGGCAAAAGAAAGATGAGAGAGGGTCTGCTTCTGGAGAAGTGAAGTTTGGCACAGGTTCTTTTGAGACAGCAATCCATTATACTCGTCGCTTTTCTTCTAAATCTCTTGGTTGCATTGCGGGAAGAATTGGGAGATGCTTGCTTCATTTCCCCTTTGCACTGAATAACATAAAGGGTTGCTCAGCCAGTTTCATTCCATACAGCATCTGTGCTGGGGTGTATATGTTGTTGCTATGGAAACTGCTAAGTTCTTCCCTTGAGATTGAAGTCGGTGGTGGGAGGAAGTTATCCAAATTCAGTACTGTGCGCTGGTTGTATATAATAGGAATTCAGGGTATTTTATGGAAGTTTGAACTCCACCGCGGGGGTCAGAAGTTAATTGTTCCTATTTTGCTGACAAGGCATTTGAACCCTTTGTTTGCTACTGGAGCATTCGTTGTTCCAGCATCCGTTTACTTTGTGCTGAAGAAACTTTTTTTTAAACCGTATTACGTTAGAAGGAATAAGCAGAAGGCTCTAGAGAAGGAAGAGAAATCTTCTGCTCAGGTTCAAGAAGCAAAGGCTGCAGCAGAAAAGGCGCAGCAATTACAACAAAATGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAACGGGCGGACTTGTTATCATGAAAGCGCTATATGGAAATCAAAAAATTTTGAACAACTTAAATTCATCAAGTGAAACGAGTTTTGAGTCAACTTCAGAAGTCATTGATGTCACAATACCTCTGAATTTTCTAGTTAACGATTCTGGCCAACTTAAGCTTCATGAAGGTGTAAAAAAATCAGGAATCATGGGCTTTTGTGATCCATGTCCAGGAGAAGGTAAACAGTTGTATGTAGAGTACGCTTATGCTGGCAACCAGCACAAGGTTTGGGTTGGTGATTATGAAGAATTACTGATACCCCAGGGCACTCACAGGATATAG 1809 0.4229 MEEQNEAPDNRELYALLNLSPEASDEEIRRAYRQWAQVYHPDKYQAPHMKDIATENFQRVCEAYEILSDPNKRQIYDIYGMEGLTSGLELGQRLDKAEEIKAELERLTKMREREKMAAHFRSSGTILANMSLPHCVNGDGLFRGMAMSSEIQSQLSKRNAVTIGGNLAVDGNEGGGAATALLRHQISEVSSVEFVASAGLRALIGVQTSRNLSSHSAATMGIAMSLKDGSLNLSNLWTRQLSETASGHGTQEWSVYHFQVPTDEDIYSHSELIQLTLGPQSAVAVGWQKKDERGSASGEVKFGTGSFETAIHYTRRFSSKSLGCIAGRIGRCLLHFPFALNNIKGCSASFIPYSICAGVYMLLLWKLLSSSLEIEVGGGRKLSKFSTVRWLYIIGIQGILWKFELHRGGQKLIVPILLTRHLNPLFATGAFVVPASVYFVLKKLFFKPYYVRRNKQKALEKEEKSSAQVQEAKAAAEKAQQLQQNVANRKRNKQLETGGLVIMKALYGNQKILNNLNSSSETSFESTSEVIDVTIPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGEGKQLYVEYAYAGNQHKVWVGDYEELLIPQGTHRI. 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02885 602 Coils Coil 94 117 - -
Seca9g02885 602 PANTHER CHAPERONE PROTEIN DNAJ 13 272 355 IPR042162 -
Seca9g02885 602 SUPERFAMILY Chaperone J-domain 9 83 IPR036869 -
Seca9g02885 602 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Seca9g02885 602 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Seca9g02885 602 CDD DnaJ 12 69 IPR001623 -
Seca9g02885 602 Gene3D DnaJ domain 1 103 IPR036869 -
Seca9g02885 602 Coils Coil 452 492 - -
Seca9g02885 602 Pfam DnaJ domain 13 77 IPR001623 -
Seca9g02885 602 PRINTS DnaJ domain signature 52 72 IPR001623 -
Seca9g02885 602 PRINTS DnaJ domain signature 72 91 IPR001623 -
Seca9g02885 602 PRINTS DnaJ domain signature 14 32 IPR001623 -
Seca9g02885 602 PRINTS DnaJ domain signature 32 47 IPR001623 -
Seca9g02885 602 SMART dnaj_3 11 72 IPR001623 -
Seca9g02885 602 Pfam DnaJ-like protein C11, C-terminal 448 596 IPR024586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02885 Seca-Chr9 42359027 42368366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02885 14 79 C2H2 Transcription Factor Family AT1G74250 44.118 7.27e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02885 K09531 - gmx:100817782 874.004