Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02880 ATGGCCACTCTCTTCCTTAATTCACTACTGCATTTGGTTTTGGTTTTGAGTTGCATATTCTATATAGCAACAGTTACATGCAAACCTTACCACTACGACGACAGTACCTTCAACACATTGTCGTCGAAGCAGAACCATAGTTGGATCGGACCTATCGGTCACCGTGTAATAACCGTCGACATTAACGGCGGTGGCCACTTCCGTTCCGTCCAGGAAGCAGTGAATGCAGTCCCATACAACAACAGAATGAACGTCCTCATTCAAATCAGCGCCGGATACTACATAGAGAAAGTGGTGGTGCCCGTGACGAAGCCGTACATAACGTTTCAAGGAGAGGGTAGGGGTGTGACGGTGATAGAATGGCATGATCGAGCCAGTGACCCTGGTCCCAACGGTCAGCAACTGCGTACTTACAGAACTGCTTCTGTTACTGTTTTTGCCAGCTATTTTTCTGCTAGGAATATCAGCTTCAAGAACACAGCGCCTGCACCAATGCCAGGGATGCAAGGATGGCAAGCGGCGGCGTTTCGCATATCAGGGGATAAAGCATACTTCTCCGGCTGTGGTTTCTACGGTGCACAAGACACTCTTTGCGACGATGCTGGCAGGCATTACTTCAAGGAATGCTATATCGAGGGTTCCATTGATTTCATTTTTGGGAATGGCAGATCCATGTACAAGGTTAGTACTTACTACTTAATTATAACAAGAGTTAGAGAACTGCAGTAA 729 0.4691 MATLFLNSLLHLVLVLSCIFYIATVTCKPYHYDDSTFNTLSSKQNHSWIGPIGHRVITVDINGGGHFRSVQEAVNAVPYNNRMNVLIQISAGYYIEKVVVPVTKPYITFQGEGRGVTVIEWHDRASDPGPNGQQLRTYRTASVTVFASYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKVSTYYLIITRVRELQ. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02880 242 Gene3D - 25 238 IPR012334 -
Seca9g02880 242 ProSitePatterns Pectinesterase signature 2. 211 220 IPR033131 -
Seca9g02880 242 Pfam Pectinesterase 57 227 IPR000070 GO:0030599|GO:0042545
Seca9g02880 242 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 49 230 - -
Seca9g02880 242 SUPERFAMILY Pectin lyase-like 54 227 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02880 Seca-Chr9 42302884 42304485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02880 4 237 Carbohydrate Esterase AT5G47500 65.812 1.49e-109 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02880 - - cam:101501763 388.267