Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02876 ATGGAGAGGCACAAATGCAAGCTTTGTTTCAGGACATTCGCCAATGGCAGAGCACTCGGTGGCCACATGAAGTCTCACTTAGCCACTCTTCCTCTTCCTCCAAAGCCTCAACCACTCCCTCTTAATCACACTTCCTTCTCCTATTCTTCTTCTTCAGAAGAAGAGAATCACAGTCACAGAGATTCAGATGAAAAGGCTCTGATTTATGGTTTGAGAGAGAACCCAAAGAAAAGTTTCAGACTTGCGGATCCTGAGTTTTCTTTCCCAGCTGATACTGGCTCTGTTGTTCAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGGAGACGATCCAAGCGAAACCGAAAACCCAGCGTTGGATTGAGTAATTTGGATCCCAAGAAGCTTAAACTGAGTTTCATGGAATCGCCAGAACCTGTGAGTTCTGTTTCTGATACTTCCCCTGAAGAAGATGTTGCCATGTGCCTCATGATGCTCTCAAGGGACAAATGGAAGAGGAATGATGTTAATGTTGTTGTTGAAGAAGAACAAGTTGAGAGATCAGAGGAAAAGTCAAAGGGATTAATCCAAGAGATCAAGTTGAAGAAAGTTCGCGGGAAGCATGAGTGTCACAACTGTGGGAAAACGTTTCGATCTTCACGAGCATTAGGGAGTCACAAAAGCATATGCCTCCGTGATGAAGCAGAGGCTGCAAATGATAATAGAATCTTTGAATGTCCATTTTGTTTCAAAGTGTTTGGGTCTGGTCAAGCACTTGGTGGCCACAAGAGATCTCATCTCCACCATCCATCTTCATCCTCAACTGCCATTGATTCTTCTACTAGATTGAAAGAGAGCTTCATCGATCTCAACTTGCCAGCTCCAGCTGAAGAAGATGACCTTAGTGTTGTTTCTGATGCCTAA 909 0.4433 MERHKCKLCFRTFANGRALGGHMKSHLATLPLPPKPQPLPLNHTSFSYSSSSEEENHSHRDSDEKALIYGLRENPKKSFRLADPEFSFPADTGSVVQDRESETESKNPTRRRSKRNRKPSVGLSNLDPKKLKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDKWKRNDVNVVVEEEQVERSEEKSKGLIQEIKLKKVRGKHECHNCGKTFRSSRALGSHKSICLRDEAEAANDNRIFECPFCFKVFGSGQALGGHKRSHLHHPSSSSTAIDSSTRLKESFIDLNLPAPAEEDDLSVVSDA. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02876 302 Pfam C2H2-type zinc finger 239 261 - -
Seca9g02876 302 Pfam C2H2-type zinc finger 203 222 - -
Seca9g02876 302 Pfam C2H2-type zinc finger 3 28 - -
Seca9g02876 302 SUPERFAMILY beta-beta-alpha zinc fingers 203 261 IPR036236 -
Seca9g02876 302 MobiDBLite consensus disorder prediction 80 149 - -
Seca9g02876 302 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Seca9g02876 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Seca9g02876 302 MobiDBLite consensus disorder prediction 28 63 - -
Seca9g02876 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 230 IPR013087 -
Seca9g02876 302 SMART c2h2final6 203 223 IPR013087 -
Seca9g02876 302 SMART c2h2final6 4 26 IPR013087 -
Seca9g02876 302 SMART c2h2final6 239 261 IPR013087 -
Seca9g02876 302 Gene3D Classic Zinc Finger 200 261 - -
Seca9g02876 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
Seca9g02876 302 ProSitePatterns Zinc finger C2H2 type domain signature. 241 263 IPR013087 -
Seca9g02876 302 Coils Coil 173 193 - -
Seca9g02876 302 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 302 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02876 Seca-Chr9 42279378 42280286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02876 1 299 C2H2 Transcription Factor Family AT3G60580 38.182 8.79e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca9g02876 zf-C2H2_6 8.9e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02876 - - gmx:100815124 375.17