Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02858 ATGGCACCCAAGATTCATGAACCAAGTAAGAAAACAATGAACAGAGGAGCATGGACCCCAGAGGAAGATCAGAAGCTAATCCAGTGCATTGAAATTCACGGTGCAAAGAGGTGGAAAACTGTTGCAGCTAACTCAGGTCTAAACAGGTGTGGAAAGAGTTGCAGGTTGAGATGGTTAAATTATTTGAGACCCAATATCAAGAGGGGCAACATATCACCTGAAGAAGAGGATTTGATTATTAGGCTTCACAGACTGCTGGGAAACAGGTGGTCTTTGATAGCTAAGAGGCTTCCAGGAAGAACAGACAATGAAATTAAAAACTATTGGAATTCTTGTTTGTGCAAAAAAGTTAATCACAAAGAGTTTAAACCAGAAACTTCAATGGCTCAAGAAACACACATGACTCAGAATAATGAGGAAGGGGCAGAGTTAGAGATTGAGAATGAGAATGAGGAGGCCATTGATGGAAGTGGAGACTCAGAAGTTAACTTTGATATGAATGAATTCTTCGATTTCTCCACTGAAAGACCCTATGCGCTGGATTGGGTGAACAATTATCTACAACTTGATGAAATCGATCCATATAGCAACTATAATGAATTGAGTGAGTGGCGTATTTTATGA 624 0.3974 MAPKIHEPSKKTMNRGAWTPEEDQKLIQCIEIHGAKRWKTVAANSGLNRCGKSCRLRWLNYLRPNIKRGNISPEEEDLIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNSCLCKKVNHKEFKPETSMAQETHMTQNNEEGAELEIENENEEAIDGSGDSEVNFDMNEFFDFSTERPYALDWVNNYLQLDEIDPYSNYNELSEWRIL. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02858 207 FunFam MYB-related transcription factor 14 67 - -
Seca9g02858 207 Gene3D - 7 68 - -
Seca9g02858 207 FunFam Transcription factor TT2 71 141 - -
Seca9g02858 207 CDD SANT 72 110 IPR001005 -
Seca9g02858 207 PANTHER MYB DOMAIN PROTEIN 55 8 150 - -
Seca9g02858 207 SMART sant 14 64 IPR001005 -
Seca9g02858 207 SMART sant 67 115 IPR001005 -
Seca9g02858 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Seca9g02858 207 Gene3D - 72 145 - -
Seca9g02858 207 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca9g02858 207 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Seca9g02858 207 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Seca9g02858 207 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Seca9g02858 207 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Seca9g02858 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Seca9g02858 207 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02858 Seca-Chr9 42102232 42104052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02858 9 203 MYB Transcription Factor Family AT3G13540 43.128 2.05e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g02858 Myb_DNA-binding 2.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02858 K09422 - gmx:100816449 290.426