Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02855 ATGAACATGGAAGAAGAAGAAGTAGGTTTGGAGGATAAGAAAAAGTACCGTGGAGTACGCATGCGTCAGTGGGGAAAATGGGTATCAGAAATCAGAGAGCCAAAGAAGAAGTCCAGAATATGGCTTGGCACTTTTTCTACGGCTGAGATGGCAGCTCGAGCCCATGATGTTGCTGCTCTTGCAATCAAAGGCAACTCTGCTTTCCTTAATTTCCCTGAATTAGCCTCACAGCTTCCCCAACCAGCCACCACTTCCCCTAAAGACATTCAAGTCGCCGCCGCCAAGGCCGCTACCATGAATTACCACCACCAAGCCCAAGAAAGCTGTTGTGAAGCCCAAGCCCAGCTGAGTCCATCCACATCGTCCTCCCACTCCCAACAATCATCCAATTCATCGTTAACCGGAGAGGATGACACATTCTTCGACCTCCCAGATCTCTCACTCGAATCAAATTACAGTGCAGGTGAATTTCTTCACTCCACACCGTGGCTCGTAGCTGGAGCTGAACATCAAGACTCAATTTTTCGGCTGGAAGAGCCTTCCCCATGGGCGCCTTGCTAA 561 0.4955 MNMEEEEVGLEDKKKYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGNSAFLNFPELASQLPQPATTSPKDIQVAAAKAATMNYHHQAQESCCEAQAQLSPSTSSSHSQQSSNSSLTGEDDTFFDLPDLSLESNYSAGEFLHSTPWLVAGAEHQDSIFRLEEPSPWAPC. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02855 186 SUPERFAMILY DNA-binding domain 15 73 IPR016177 GO:0003677
Seca9g02855 186 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Seca9g02855 186 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Seca9g02855 186 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Seca9g02855 186 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Seca9g02855 186 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Seca9g02855 186 CDD AP2 14 74 IPR001471 GO:0003700|GO:0006355
Seca9g02855 186 MobiDBLite consensus disorder prediction 110 136 - -
Seca9g02855 186 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700|GO:0006355
Seca9g02855 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 150 - -
Seca9g02855 186 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02855 Seca-Chr9 42080529 42081237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02855 16 163 AP2-EREBP Transcription Factor Family AT2G35700 61.486 1.72e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g02855 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02855 - - gmx:100812293 219.164