Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02839 ATGGCGAACCCTGTTGAAGTTTCTGCACTCAATCGCATAAAGTTGCATCTTCTAGGCGAACTCTCTCCCCTCCCACAACGCACTTCCTGCACTGAACATACCCAAAATAATCTCTGGTTTCAACTTGATGAATCAAACACAACTTCCTCTCAATGTTCTGATTCTTCCTCATACTTAACTGAACTCCTCGATCTCCCAACCGATTCCATGCCTTTTGAATTTGAGTTCAAACCCCAAATAATTGACCTAGAAACCCCTGGACCTCAAACCATTGAGAAGAAACAAACTCAATCGAATCGAAAGCCTTCGTTGCAAATCTCTCTCCCCAAGAAGACCGAGTGGATCCATTTCGGAGAGCCGGAGGTTCAAGAAATGGCGGCAAAGCCTGAGGAGAAGAAGCACTACAGAGGGGTGCGACAGAGGCCATGGGGCAAGTTCGCTGCGGAGATCCGAGACCCGAACAAGCGTGGATCCAGGGTGTGGTTGGGAACATTCGACACAGCTATTGAAGCTGCTAAAGCCTACGACCGAGCAGCGTTTAAGCTTCGGGGTTCTAAGGCCATTCTCAACTTCCCCCTCGAAGCTGGTGCCGATGAGCGGAAGCACCGCCGAGAAGAGGAAGTGGTGGTGGAAGTTGTGAAGAGGATAAAGACGGCGGAAACGGACATTAACCGTGTAAGGGATACTCCGTTAACGCCGTCTAGCTGGAAAGGGTTCTGGGACGCTGATGTAAAGGGTATTTTCACGGTCCCGCCTTTGTCACCGTTATCTCCCCATCCAGCATTGGGTTATCAACAGCTTATGGTTGTCTGA 813 0.4969 MANPVEVSALNRIKLHLLGELSPLPQRTSCTEHTQNNLWFQLDESNTTSSQCSDSSSYLTELLDLPTDSMPFEFEFKPQIIDLETPGPQTIEKKQTQSNRKPSLQISLPKKTEWIHFGEPEVQEMAAKPEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEAGADERKHRREEEVVVEVVKRIKTAETDINRVRDTPLTPSSWKGFWDADVKGIFTVPPLSPLSPHPALGYQQLMVV. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02839 270 PANTHER DNA-BINDING DOMAIN 96 203 IPR044808 GO:0003700|GO:0009873
Seca9g02839 270 FunFam Ethylene-responsive transcription factor 2 133 194 - -
Seca9g02839 270 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Seca9g02839 270 PRINTS Ethylene responsive element binding protein signature 174 194 IPR001471 GO:0003700|GO:0006355
Seca9g02839 270 SMART rav1_2 134 198 IPR001471 GO:0003700|GO:0006355
Seca9g02839 270 Pfam AP2 domain 134 184 IPR001471 GO:0003700|GO:0006355
Seca9g02839 270 CDD AP2 133 192 IPR001471 GO:0003700|GO:0006355
Seca9g02839 270 ProSiteProfiles AP2/ERF domain profile. 134 192 IPR001471 GO:0003700|GO:0006355
Seca9g02839 270 SUPERFAMILY DNA-binding domain 134 193 IPR016177 GO:0003677
Seca9g02839 270 Gene3D AP2/ERF domain 133 194 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02839 Seca-Chr9 41976799 41977689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02839 1 270 AP2-EREBP Transcription Factor Family AT5G47230 47.667 1.11e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g02839 AP2 3.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02839 K09286 - gmx:100808173 335.109