Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02838 ATGAACCGGCAGTCCTATAAATATCTGCATCCTCTTTCCCTTCCAAGTTCGAATATTCAATTCGATACATTCTCTCAAAACCAAGACATGAACGAACAGAGTATGTATGAGTCTGATATGGCTCTTTTGGACTCCATTCGCCGCCACTTGCTCGGCGATTCCGATGTATACAGATTCGGGGCTCCGTCTATAAATTCGGGTAACGCTCCAATTTACTGTCGGAGCTCCAGTTTCAGCAACTTGTACCCGTGTCTGAGTGACAATTGGGGCGAACTTCCACTCAAGGAAGACGATTCAGAAGACATGGTACTTTACGGTGTACTTCGCGATGCCGTTAATGTTGGGTGGGTCCCATCTCTCGATGCAGGCTCACCGGAGAGCTACTCGTCTGGTTCTCTGTCGACGGTAACCGTCAAATCGGAGCCGGATATTTTCCCGGCAGTTCAGAGTCCACCGGAGCAGGTCGTTCCGGCTCCGGTAATTCCAGAAGAGAAGGCTGCGCCGGCGAAGGCAAAGCATTACCGCGGCGTTCGGCGACGGCCGTGGGGGAAATTCGCGGCGGAGATCCGTGACCCGGCTAAGAATGGGGCCCGGGTTTGGCTCGGAACTTTTGAAACGGCTGAGGACGCTGCGTTGGCTTACGATCGTGCTGCGTACAGAATGCGAGGCTCGCGGGCTCTGTTGAATTTCCCGCTTCGGGTCAATTCGGGTGAGCCCGACCCGGTTCGAGTGACGTCGAAAAGGTCCTCATCGGATTCTTCTTGTTCTTCATCGTCGTCGGAGAGTGGGTCGACGGTGAAGCGGAGGAAGAAGATGGTGGGGCCAGTGGTGCCGGTGGTGACAGCTCAGAGTGAATTGAAAACTGAGCAAGTGGGAAGTCAAGTGGCAGAGTGCACACGTGGAGAACAGTTATTGGTCAGCTAA 924 0.5368 MNRQSYKYLHPLSLPSSNIQFDTFSQNQDMNEQSMYESDMALLDSIRRHLLGDSDVYRFGAPSINSGNAPIYCRSSSFSNLYPCLSDNWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLDAGSPESYSSGSLSTVTVKSEPDIFPAVQSPPEQVVPAPVIPEEKAAPAKAKHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSSDSSCSSSSSESGSTVKRRKKMVGPVVPVVTAQSELKTEQVGSQVAECTRGEQLLVS. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02838 307 Pfam AP2 domain 173 223 IPR001471 GO:0003700|GO:0006355
Seca9g02838 307 PRINTS Ethylene responsive element binding protein signature 174 185 IPR001471 GO:0003700|GO:0006355
Seca9g02838 307 PRINTS Ethylene responsive element binding protein signature 197 213 IPR001471 GO:0003700|GO:0006355
Seca9g02838 307 ProSiteProfiles AP2/ERF domain profile. 173 231 IPR001471 GO:0003700|GO:0006355
Seca9g02838 307 MobiDBLite consensus disorder prediction 242 263 - -
Seca9g02838 307 FunFam Ethylene-responsive transcription factor 2 172 232 - -
Seca9g02838 307 Gene3D AP2/ERF domain 172 234 IPR036955 GO:0003700|GO:0006355
Seca9g02838 307 SMART rav1_2 173 237 IPR001471 GO:0003700|GO:0006355
Seca9g02838 307 MobiDBLite consensus disorder prediction 237 274 - -
Seca9g02838 307 CDD AP2 172 231 IPR001471 GO:0003700|GO:0006355
Seca9g02838 307 PANTHER DNA-BINDING DOMAIN 149 270 IPR044808 GO:0003700|GO:0009873
Seca9g02838 307 SUPERFAMILY DNA-binding domain 173 233 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02838 Seca-Chr9 41951913 41952934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02838 37 306 AP2-EREBP Transcription Factor Family AT4G17500 54.035 2.86e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g02838 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02838 K09286 - gmx:100819649 368.237