Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02832 ATGTCTAAGTGGGCATTTGAAAGACATGCAAATAGTGATCACAGAAAACCCTATGAACATATTTACACCCTACAAACACAAGAAAATCTCCAAGATTGCCTCATTGCTGTGTGGCTTCATTCAAGAGAACGCCGTCAAGAATTCTGCTTTTTTCCCAAGGAAAAACAAGAAGATGATCCTTGTTCAATATGTGCAAATGGGGGAGACATATTCGGTTGCGAGCATTGTCCCTCAGCATTCCATGCATCCTGTCTGAATATGGAGAGGGCTCCCCGTCGTGATTGGTCTTGTCCCTACTGCGTTTGTAAGTACTGTAGTCTCAGGGTTTATGGAAAACAAAGGCAACTCATCACATGCTTGCAGTGTAACAAAAATTTTCACTGGCAATGTTTAAAAGAATTCTCCAAAGACCCTGTGGATGTTAGCGGGGACGTGCTGTATTGCAGCCAAAGCTGCAAAGAGATATATGATGAACTGGAGAGGTCAATTGCAGTCAGTAACGAGTTTGCAAACTACACTTGGTCAATCATCCGCCCTCAGACAACCTTAGCTATGACTAGATATTTTGAATGCAATGCAAAGGTCCTAGTAGCTTTCTCATTAATGAATGAATGTTTTGAGACAATAACTGACAGACACACAGGCATCAATGTGGTTCAAAATGTACTATACAGTTGTAGATCACCAGATTTAACCAGGGTCAATTTTATACGTTTTCATATATTGATCCCGGAGGTAGATGATGCAATTGTATGTGCAGCTTCTATAAGGATTCATGGGAGGGAGGTTGCAGAAATGCCTTTTATTGCCACAGAAGGGACACGCAGGAGACAAGGATTTTGCAGGAATTTAATGATTGTAATTGAATCGTTTCTATGTGTCCTTAAAGTGCAGAAGCTGGTCATTCAATCTGTTCCAGATACTTTTTCCAGTTTGGTTTCAAAGAACTGGCTGGGAACTTTGAGAAAGAACTTGCCTCCTATAACATTTTGA 993 0.4079 MSKWAFERHANSDHRKPYEHIYTLQTQENLQDCLIAVWLHSRERRQEFCFFPKEKQEDDPCSICANGGDIFGCEHCPSAFHASCLNMERAPRRDWSCPYCVCKYCSLRVYGKQRQLITCLQCNKNFHWQCLKEFSKDPVDVSGDVLYCSQSCKEIYDELERSIAVSNEFANYTWSIIRPQTTLAMTRYFECNAKVLVAFSLMNECFETITDRHTGINVVQNVLYSCRSPDLTRVNFIRFHILIPEVDDAIVCAASIRIHGREVAEMPFIATEGTRRRQGFCRNLMIVIESFLCVLKVQKLVIQSVPDTFSSLVSKNWLGTLRKNLPPITF. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02832 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 114 IPR013083 -
Seca9g02832 330 PANTHER PHD FINGER PROTEIN 12 4 308 IPR042163 GO:0003714|GO:0045892
Seca9g02832 330 SMART PHD_3 60 101 IPR001965 -
Seca9g02832 330 SMART PHD_3 102 153 IPR001965 -
Seca9g02832 330 ProSiteProfiles Zinc finger PHD-type profile. 58 103 IPR019787 -
Seca9g02832 330 SUPERFAMILY FYVE/PHD zinc finger 55 106 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02832 Seca-Chr9 41851489 41853440 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02832 6 307 PHD Transcription Factor Family AT1G05380 35.647 5.37e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02832 - - vum:124834316 315.849