Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02830 ATGTTGAACTCAGTTGTTGACAATATTGCAAGAGAAACTGTGTTAGTGAACTCAGTCGTGGATAATATTCCAAGGCATTGCAAGGGTAGGAGGAGTCGCACTGCTAAGAAGACCACTACAACAGAACCAAAGAGGCAAAACGGTGAGGTTGGACAAACTTCAACCATTGAAATAGATCCACCTCTACATGAAGGCTCAAGTCAAGGACAAGGTTGCAGTGTGGAAAGAGTTTCATCTATACCTGAAGCATCAACAAGTTCAAGTAAAAAAACCATCTTGTCTTTGTTAATAGACCGTAAGCACATCCAGAAAGACGAGCAAGTCTTCTATAAGCATGATGATAGAAATGAGGGAAGTGCAGCTGCAACGGGACTGAGAGGAAGAATTACCAGAGGTGGAATTCTCTGCAGCTGTTGCCAGAAAGAAATATCTGTGTGGGCATTTGAAAGACATGCAAATAGTGGTCACAGAAAACCCTATGAACATATTTACACCCTACAAACACAAGAAAATCTCCAAGATTGCCTCATTGCTGTGTGGCTTCATTCATCTGAAAGAGAACGCCGTCAAGAATTCTGCTTTTTTCCCAAGGAAAAACAAGAAGATGATCCTTGTTCAATATGTGCAAATGGGGGAGACATATTCCGTTGCGAGCATTGTCCCTCAGCATTCCATGCATCCTGTCTGAATATGGAGAGGGCTCCCCGTCGTGATTGGTCTTGTCCCTGCTGCGTTTGTAAGTACTGTAGTCTCACGGTTTATGGAAAACAAAGGCAACTCATCACATGCTTGCAGTGTGACAAAAATTTTCACTGGCAATGTTTAAAAGAATTCTCCAAAGACCATGTGGATGTTAGCGGGGACGTGCTGTATTGCAGCCAAAGCTGCAAAGAGATATATGATGAACTGGAGAGGTCAATTGCAGTCAGTAACGAGTTTGCAAACTACACTTGGTCAATCATCCGCCCTCAGACAACCTTAGCTATGACTAGATATTTTGAATGCAATGCAAAGGTCCCAGTAGCTTTCTCATTAATGAATGAATGTTTTGAGACAATAACTGACAGACACACAGGCATCAATGTGGTTCAAAATGTACTATACAGTTGTAGATCACCAGATTTAACCAGGGTCAATTTTATACGTTTTCATATATTGATCCCGGAGGTAGATGATGCAATTGTATGTGCAGCTTCTATAAGGATTCATGGGAGGGAGGTTGCAGAAATGCCTTTTATTGCCACAGAAGGGACACGCAGGAGACAAGGATTTTGCAGGAATTTAATGATTGTAATTGAATCGTTCCTATGTGTCCTTAAAGTGCAGAAGCTGGTCATTCAATCTGTTCCAGATACTTCGGATACGTGGAAGCACAAGTTTGGTTTCAAAGAACTGGCTGGGAACTTTGAGAAAAAACTGGCCTCCTATAACATTTTGACGCTCCCTCAGGCTTCAAAACTTTACAAAGACTTGGGTGGTAATCCAAATTGA 1491 0.4178 MLNSVVDNIARETVLVNSVVDNIPRHCKGRRSRTAKKTTTTEPKRQNGEVGQTSTIEIDPPLHEGSSQGQGCSVERVSSIPEASTSSSKKTILSLLIDRKHIQKDEQVFYKHDDRNEGSAAATGLRGRITRGGILCSCCQKEISVWAFERHANSGHRKPYEHIYTLQTQENLQDCLIAVWLHSSERERRQEFCFFPKEKQEDDPCSICANGGDIFRCEHCPSAFHASCLNMERAPRRDWSCPCCVCKYCSLTVYGKQRQLITCLQCDKNFHWQCLKEFSKDHVDVSGDVLYCSQSCKEIYDELERSIAVSNEFANYTWSIIRPQTTLAMTRYFECNAKVPVAFSLMNECFETITDRHTGINVVQNVLYSCRSPDLTRVNFIRFHILIPEVDDAIVCAASIRIHGREVAEMPFIATEGTRRRQGFCRNLMIVIESFLCVLKVQKLVIQSVPDTSDTWKHKFGFKELAGNFEKKLASYNILTLPQASKLYKDLGGNPN. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02830 496 SUPERFAMILY FYVE/PHD zinc finger 199 250 IPR011011 -
Seca9g02830 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 254 IPR013083 -
Seca9g02830 496 PANTHER PHD FINGER PROTEIN 12 47 491 IPR042163 GO:0003714|GO:0045892
Seca9g02830 496 MobiDBLite consensus disorder prediction 26 85 - -
Seca9g02830 496 ProSiteProfiles Zinc finger PHD-type profile. 202 247 IPR019787 -
Seca9g02830 496 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 338 465 IPR016181 -
Seca9g02830 496 Pfam Tify domain binding domain 127 177 IPR032308 -
Seca9g02830 496 MobiDBLite consensus disorder prediction 66 85 - -
Seca9g02830 496 SMART PHD_3 245 297 IPR001965 -
Seca9g02830 496 SMART PHD_3 204 244 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02830 Seca-Chr9 41824642 41827044 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02830 52 491 PHD Transcription Factor Family AT4G14920 35.368 3.18e-84 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02830 - - vum:124834316 409.838