Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02825 ATGCTTATGCTGGTTTATGAGTATGGAAGTCCTCCTAATTCTGTCACTGATATTTTGGCACAGAGAATAAACATGGGGAGAACCAGACAACAATTAAAAGAGCCAGGAAACAACAGGCCCTACACATTAAGGGAACGGAAGTATATAGACTATGTCGAACCTGAATTTAACGACAATGAAAATGTTGAAGACCACATAATATCCAGACCCAACATACCAACTAAAAGAAAAAACACAGCATCATCATCATCATTTATTCTACCACCAACAACAACAGAGACTGTGATGGTGAACTCAGTTGTTGACAATAATGCAAGAGACATTGTGATGTTGAACTCAGTTGTTGACAATATTGCAAGAGAAACTGTGTTAGTGAACGATAATATTCCAAGGCATTGCAAGGGTAGGAGGAGTCGCACTGCTAAGAAGACCACTACAACAGAACCAAAGAGGCAAAACGGTGAGGTTGGACAAACTTCAACCATTGAAATAGATCCACCTCTACATGAAGGCTCAAGTCAAGGACAAGGTTGCAGTGTGGAAAGAGTTTCATCTATACATGAAGCATCAACAAGTTCAAGTAAAAAAACCATCTTGTCTTTGTTAATAGACCGTAAGCACATCCAGGAAGACGAGCAAGTCTTCTATAAGCATGATGATAGAAATGAGGGAAGTGCAACTGCAACGGGACTGAGAGGAAGAATTACCAGAGGTGGAATTCTCTGCAGCTGTTGCCAGAAAGAAATGTCTGTGTGGGCATTTGAAAGACATGCAAATAGTGGTCACAGAAAACCCTATGAACATATTTACACCCTACAAACACAAGAAAATCTCCAAGATTACCTCATTGCTGTGTGGCTTCATTCATCTGAAAGAGAACGCCGTCAAGAACTCTGCTTTTTTCCCAAGGAAAAACAAGAAGATGATCCTTGTTCAATATGTGCAAATGGGGGAGACATATTCCGTTGCGAGCATTGTCCCTCAGCATTCCATGCATCCTGTTTGAATATGGAGAGGGCTCCCCGTCGTGATTGGTCTTGTCCCTACTGCGTTTGTAAGTACTGTAGTCTCAGGGTTTATGGAAAACAAAGGCAACTCATCACATGCTTGCAGTGTGACAAAAATTTTCACTGGCAATGTTTAAAAGAATTCTCCAAAGCCCCTGTGGATGTTAGCGGGGACGTGCTGTATTGCAGCCAAAGCTGCAAAGAGTCAGTAGCTATGACTAGATATTTTGAATGCAATGCAAAGGTCCCAGTAGCTTTCTCATTAATGAATGAATGTTTTGAGACAATAACTGACAGACACACAGGCATCAATGTGGTTCAAAATGTACTATACAGTTGTAGATCACCAGATTTAACCAGGGTCAATTTTGGGCGTTTTCATATATTGATCCTGGAGGAAGATGATGCAATTGTATGTGCAGCTTCTATAAGGATTCATGGGAGGGAGGTTGCAGAAATGCCTTTTATTGCCACAGAAGGGACACGCAGGAGACAAGGATTTTGCAGGAATTTAATGATTGTAATTGAATCGTTCCTATGTGTCCTTAAAGTGCAGAAGCTGGTCATTCAATCTGTTCCAGATACTTCGGATATGTGGAAGCACAAGTTTGGTTTCAAAGAACTGGCTGGGAACTTTGAGAAAGAACTTGCCTCCTATAACATTTTGACGCTCCCTCATGCTTCAAAACTATACAAAGACTTGGGTGGTAATCCAAATTGA 1728 0.4097 MLMLVYEYGSPPNSVTDILAQRINMGRTRQQLKEPGNNRPYTLRERKYIDYVEPEFNDNENVEDHIISRPNIPTKRKNTASSSSFILPPTTTETVMVNSVVDNNARDIVMLNSVVDNIARETVLVNDNIPRHCKGRRSRTAKKTTTTEPKRQNGEVGQTSTIEIDPPLHEGSSQGQGCSVERVSSIHEASTSSSKKTILSLLIDRKHIQEDEQVFYKHDDRNEGSATATGLRGRITRGGILCSCCQKEMSVWAFERHANSGHRKPYEHIYTLQTQENLQDYLIAVWLHSSERERRQELCFFPKEKQEDDPCSICANGGDIFRCEHCPSAFHASCLNMERAPRRDWSCPYCVCKYCSLRVYGKQRQLITCLQCDKNFHWQCLKEFSKAPVDVSGDVLYCSQSCKESVAMTRYFECNAKVPVAFSLMNECFETITDRHTGINVVQNVLYSCRSPDLTRVNFGRFHILILEEDDAIVCAASIRIHGREVAEMPFIATEGTRRRQGFCRNLMIVIESFLCVLKVQKLVIQSVPDTSDMWKHKFGFKELAGNFEKELASYNILTLPHASKLYKDLGGNPN. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02825 575 PANTHER PHD FINGER PROTEIN 12 78 406 IPR042163 GO:0003714|GO:0045892
Seca9g02825 575 SMART PHD_3 310 351 IPR001965 -
Seca9g02825 575 SMART PHD_3 352 403 IPR001965 -
Seca9g02825 575 MobiDBLite consensus disorder prediction 133 189 - -
Seca9g02825 575 MobiDBLite consensus disorder prediction 172 189 - -
Seca9g02825 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 360 IPR013083 -
Seca9g02825 575 Pfam Tify domain binding domain 233 272 IPR032308 -
Seca9g02825 575 ProSiteProfiles Zinc finger PHD-type profile. 308 353 IPR019787 -
Seca9g02825 575 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 420 561 IPR000182 GO:0016747
Seca9g02825 575 SUPERFAMILY FYVE/PHD zinc finger 305 356 IPR011011 -
Seca9g02825 575 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 458 543 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02825 Seca-Chr9 41725851 41728534 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02825 158 570 PHD Transcription Factor Family AT4G14920 35.220 7.75e-81 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02825 - - pvu:PHAVU_009G190800g 386.726