Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02822 ATGCAAATAGTGATCACAGAAAAACCCTATGAACATATTTACACCCTACAAACACAAGAAAATCTCCAAGATTGCCTCATTGCTGTGTGGCTTCATTCATCTGAAAGAGAACGCCGTCAAGAATTCTGCTTTTTTCCCAAGGAAAAACAAGAAGATGATCCTTGTTCAATATGTGCAAATGGGGGAGACATATTCCGTTGCGAGCATTGTCCCTCAGCATTCCATGCATCCTGTCTAAATATGGAGAGGGCTCCCCGTCGTGATTGGTCTTGTCCCTACTGCGTTTGTAAGTACTGTAGTCTCAGGGTTTATGGAAAACAAAGGCAACTCATCACATGCTTGCAGTGTGACAAAAATTTTCACTGGCAATGTTTAAAAGAATTCTCCAAAGACCCTGTGGATGTTAGCGGGGACGTGCTGTATTGCAGCCAAAGCTGCAAAGAGATATATGATGAACTGGAGAGGTCAATTGCAGTCAGTAATGAGTTTGAAAACTACACTTGGTCAATCATTCGCGCTCAGACAACCTTAGCTATGACTAGATATTTTGAATGCAATGCAAAGGTCCTAGTAGCTTTCTCATTAATGAATGAATGTTTTGAGACAATAACTGACAGACACACAGGCATCAATGTGGTTCAAAATGTACTATACAGTTGTAGATCACCAGATTTAACCAGGATCAATTTTGGGCGTTTTCATATATTGATCCTGGAGGAAGATGATGCAATTGTATGTGCAGCTTCTATAAGGTATTCTCTTTCTCTGGTTATCTTTTCTACTTTTGTTTGGATTAGCCACTCCATGCCATTATACACCCCACACCCAAAAAAAAACATATTGTGTAAAATTTTACTTGAGAAAAGTCTAAAGAGGGTTATAAATATGACTTAA 894 0.3915 MQIVITEKPYEHIYTLQTQENLQDCLIAVWLHSSERERRQEFCFFPKEKQEDDPCSICANGGDIFRCEHCPSAFHASCLNMERAPRRDWSCPYCVCKYCSLRVYGKQRQLITCLQCDKNFHWQCLKEFSKDPVDVSGDVLYCSQSCKEIYDELERSIAVSNEFENYTWSIIRAQTTLAMTRYFECNAKVLVAFSLMNECFETITDRHTGINVVQNVLYSCRSPDLTRINFGRFHILILEEDDAIVCAASIRYSLSLVIFSTFVWISHSMPLYTPHPKKNILCKILLEKSLKRVINMT. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02822 297 PANTHER PHD FINGER PROTEIN 12 9 254 IPR042163 GO:0003714|GO:0045892
Seca9g02822 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 106 IPR013083 -
Seca9g02822 297 SMART PHD_3 54 95 IPR001965 -
Seca9g02822 297 SMART PHD_3 96 147 IPR001965 -
Seca9g02822 297 ProSiteProfiles Zinc finger PHD-type profile. 52 97 IPR019787 -
Seca9g02822 297 SUPERFAMILY FYVE/PHD zinc finger 49 100 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02822 Seca-Chr9 41689501 41690903 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02822 8 267 PHD Transcription Factor Family AT4G14920 32.721 1.63e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02822 - - vum:124834316 251.906