Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02819 ATGGGGAGAACCAGACAACAATTAAAAGAGGAAGGAAACAACAGGCCCTACACATTAAGGGAACGTAAGTATATAGACTATGCAGAACCTGAATTTAACGACAATGAAAACGTTGAAGACCACGTAGTATCCAGACCCAACATACCAACTAAAAGAAGAAACACAGCATCATCATCATCATTTATTCCACCACCACCAACAACAACAAAGACTGTGATGGTGAACTCAGTTGTTGACAATAATGCAAGAGAGACTGTGATAGTGAACTCAGTTGTTGACAATATTGCAAGAGAAACTGTGTTAGTGAACTCAGTCGTGGATAATATTCCAAGGCATTGCAAGGGTAGGAGGAGTCGCACTGCTAAGAAGACCACTACAACAGAACAAAAGAGGCAAAACAATGAGGTTGGACAAACTTCAACCATTGAAATAGATCCACCTTTACATGAAGGCTCAAGTCAAGGACAAGGTTGCAGTGTGGAAAGAGTTTCATCTATACCTGAAGCAGCAACAAGTTCAAGTAAAAAAACCATCTTGTCTTTGTTAATAGACCGTAAGCACATCCAGGAAGACGAGCAAGTCTTCTATAAGCATGATGATAGAAATGAGGGAAGTGCAGCTGCAACGGGACTGAGAGGAAGAATTACCAGAGGTGGAATTCTCTGCAGCTGTTGCCAGAAAGAAATGTCTGTGTGGGCATTTGAAAGACATGCAAATAGTGATCATAGAAAACCCTATGAACATATTTACACCCTACAAACACAAGAAAATCTCCAAGATTGCCTCATTGTTGTGTGGCTTCATTCATCTGAAAGAGAACGCCGTCAAGAATTCTGCTTTTTTCCCAAGGAAAAACAAGAAGATTATCCTTGTTCAATATGTGCAAATGGGGGAGACATATTCCGTTGCAAGCATTGTCCTGTCTATATTACTTTTGAAACAGTCTGTCTGATAAAGATATATATGTATTTTAAAATGCAGAGGGCTCCCCGTCGTGATTGGTCTTGTCCCTACTGCGTTTGTGACAAAAATTTTCACTGGCAATGTTTAAAAGAATTCTCCAAAGACCCTGTGGATGTTAGCGGGGACGTGCTGTATTGCAGCCAAAGCTGCAAAGAGATATATGATGAACTGGAGAGGTCAATTGCAGTCAGTAATGAGTTTGAAAACTACACTTGGTCAATCATCCGCCCCCAGACAACCTTAGCTATGACTAGATCACCAGATTTAACCAGGGTCAATTTTCGGCGTTTTCATATATTGATCCTGGAGGAAGATGATGCAATTGTATGTGCAGCTTCTATAAGGATTCATGGGAGGGAGGTTGCAGAAATGCCTTTTATTGCCACAGAAGGGACACGCAGGAGACAAGGATTTTGCAGGAATTTAATGATTGTAATTGAATCGGATATGTGGAAGCACAGGTTTGATTTCAAAGAACTGGCTGGGAACTTTGAGAAAGAACTTGCCTCCTATAACATTTTGACGCTCCCTCATGCTTCAAAACTATACAAAGACTTGGGTGGTAATCCAAATTGA 1539 0.4074 MGRTRQQLKEEGNNRPYTLRERKYIDYAEPEFNDNENVEDHVVSRPNIPTKRRNTASSSSFIPPPPTTTKTVMVNSVVDNNARETVIVNSVVDNIARETVLVNSVVDNIPRHCKGRRSRTAKKTTTTEQKRQNNEVGQTSTIEIDPPLHEGSSQGQGCSVERVSSIPEAATSSSKKTILSLLIDRKHIQEDEQVFYKHDDRNEGSAAATGLRGRITRGGILCSCCQKEMSVWAFERHANSDHRKPYEHIYTLQTQENLQDCLIVVWLHSSERERRQEFCFFPKEKQEDYPCSICANGGDIFRCKHCPVYITFETVCLIKIYMYFKMQRAPRRDWSCPYCVCDKNFHWQCLKEFSKDPVDVSGDVLYCSQSCKEIYDELERSIAVSNEFENYTWSIIRPQTTLAMTRSPDLTRVNFRRFHILILEEDDAIVCAASIRIHGREVAEMPFIATEGTRRRQGFCRNLMIVIESDMWKHRFDFKELAGNFEKELASYNILTLPHASKLYKDLGGNPN. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02819 512 PANTHER PHD FINGER PROTEIN 12 409 507 IPR042163 GO:0003714|GO:0045892
Seca9g02819 512 MobiDBLite consensus disorder prediction 114 160 - -
Seca9g02819 512 MobiDBLite consensus disorder prediction 130 160 - -
Seca9g02819 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 340 IPR013083 -
Seca9g02819 512 Pfam Tify domain binding domain 213 262 IPR032308 -
Seca9g02819 512 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 414 483 IPR016181 -
Seca9g02819 512 MobiDBLite consensus disorder prediction 48 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02819 Seca-Chr9 41631097 41633543 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02819 95 507 PHD Transcription Factor Family AT4G14920 26.046 2.73e-48 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02819 - - aprc:113870228 294.664