Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02811 ATGTTGAATTCAGTTGTTGACAATATTGCAAGAGAAACTGTGTTAGTGAACTCAGTCGTGGATAATATTCCAAGGCATTGCAAGGGTAGGAGGAGTCGCATTGCTAAGAAGACCACTACAACAGAATCAAAGAGGCAAAACGGTGAGGTTGGACAAACTTCAACCATTGAAATAGATCCACCTCTACATGAAGGCTCAAGTCAAGGACAAGGTTGCAGTGTGGAAAGAGTTTCATCTATACCTGCATCAACAAGTTCAAGTGAAAAAACCATCTTGTCTTTGTTAATAGACCGTAAGCACATCCAGGAAGACGAGCAAGTCTTTTATAAGCATGATGATAGAAATGAGGGAAGTGCAGCTGCAACGGGACTGAGAGGAAGAATTACCAGAGGTGGAATTCTCTGCAGCTGTTGCCAAAAAGAAATGTCTGTGTGGGCATTTGAAAGACATGCAAACAGTGATCACAGAAAACCCTACGAACATATTTACATCCTACAAACACAAGAAAATCTCCAAGATTGCCTCATTGCTGTGTGGCTTCATTCATCTGAAAGAGAACGCCGTCAAGAATTCTGCTTTTTTCCCAAGGAAAAACAAGAAGATGATCCTTGTTCAATATGTGCAAATGGGGGAGACATATTCCGTTGTGAGCATTGTCCCTCAGCATTCCATGCATCCTGTGTGAATATGGAGAGGGCTCCCCGTCGTGATTGGTCTTGTCCCTACTGCGTTTGTAAGTACTGTAGTCTCAGGGTTTATGGAAAACAAAGGCAACTCATCACATGCTTGCAGTGTGACAAAAATTTTCACTGGCAATGTTTTAAAGAATTCTCCAAAGACCCTGTGGATGTTAGCGGGGATGTGCTATATTGCAGCCAAAGCTGCAAAGAGATATATGATGAACTGGAGAGGTCAATTGCAGTCAGTAACGAGTTTGCAAACTACACTTGGTCAATCATCCGCCCTCAGACAACCTTAGCTATGACTAGATATTTTGAATGCAATGCAAAGGTCCTAGTAGCTTTCTCATTAATGAATGAATGTTTTGAGACAATAACTGACAGACACACAGGCATCAATGTGGTTCAAAATGTACTATACAGTTGTAGATCACCAGATTTAACCAGGGTCAATTTTGGGCGTTTTCATATATTTATCCTGGAGGAAGATGATGCAATTGTATGTGCAGCTTCTATAAGGATTCATGGGAGGGAGGTTGCAGAAATGCCTTTTATTGCCACAGAAGGGACATGCAGGAGACAAGGAATTTGCAGGAATTTAATGATTGTAATTGAATCGGTTCTATGTGCCCTTAAAGTGCAGAAGCTGGTCATTCAATCTGTTCCAGATACTTCCGATATGTGGAAGCACAGCTTTGGTTTTAAAGAACTGGCCGCTGGGAAGTTAGAGAAAGAACTTGCCTCCTATAACATTCTGACGCTCCCTCATGCTTCAAAACTGTACAAAGACTTGGGTTGTAATCCAAACTAA 1491 0.4152 MLNSVVDNIARETVLVNSVVDNIPRHCKGRRSRIAKKTTTTESKRQNGEVGQTSTIEIDPPLHEGSSQGQGCSVERVSSIPASTSSSEKTILSLLIDRKHIQEDEQVFYKHDDRNEGSAAATGLRGRITRGGILCSCCQKEMSVWAFERHANSDHRKPYEHIYILQTQENLQDCLIAVWLHSSERERRQEFCFFPKEKQEDDPCSICANGGDIFRCEHCPSAFHASCVNMERAPRRDWSCPYCVCKYCSLRVYGKQRQLITCLQCDKNFHWQCFKEFSKDPVDVSGDVLYCSQSCKEIYDELERSIAVSNEFANYTWSIIRPQTTLAMTRYFECNAKVLVAFSLMNECFETITDRHTGINVVQNVLYSCRSPDLTRVNFGRFHIFILEEDDAIVCAASIRIHGREVAEMPFIATEGTCRRQGICRNLMIVIESVLCALKVQKLVIQSVPDTSDMWKHSFGFKELAAGKLEKELASYNILTLPHASKLYKDLGCNPN. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02811 496 SUPERFAMILY FYVE/PHD zinc finger 198 249 IPR011011 -
Seca9g02811 496 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 369 464 IPR016181 -
Seca9g02811 496 SMART PHD_3 245 296 IPR001965 -
Seca9g02811 496 SMART PHD_3 203 244 IPR001965 -
Seca9g02811 496 CDD NAT_SF 384 445 - -
Seca9g02811 496 PANTHER PHD FINGER PROTEIN 12 39 491 IPR042163 GO:0003714|GO:0045892
Seca9g02811 496 MobiDBLite consensus disorder prediction 32 81 - -
Seca9g02811 496 Gene3D - 348 480 - -
Seca9g02811 496 MobiDBLite consensus disorder prediction 66 81 - -
Seca9g02811 496 Pfam Tify domain binding domain 126 176 IPR032308 -
Seca9g02811 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 253 IPR013083 -
Seca9g02811 496 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 340 482 IPR000182 GO:0016747
Seca9g02811 496 ProSiteProfiles Zinc finger PHD-type profile. 201 246 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02811 Seca-Chr9 41516013 41518331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02811 9 491 PHD Transcription Factor Family AT4G14920 33.333 1.46e-86 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02811 - - vum:124834316 423.705