Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02789 ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACGCCACTTTGGCGCAATGGACCACCAGAGAAGCCAGTACTATGCAATGCATGTGGGTCTCGGTGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAACTGATGATTATGAGGATCAAAGGGCTCCAAGGGTAAAGAGCATATCATTAAATAAGAACAAAGAGGTGAAATCACTCAAAAGAAAGCAGAACCATGATAATGTAGTATCTGGAGGGCTTGCACCTGATTACAACCAGGGATTCCAAAAGGCTGTAGATGAAGATACAAGCAATCGGTCAAGTTCAGGATCAGCCATCTCTAACTCAGAGAGCTGTGCACAATTTGGTGGCACAGATGCTAGTGATCTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGTGGGTCGACCAAAGCCTTCTTCTGTTGAGAAGCTCACAAAAGATTTATGCACTATTCTTCACGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTTTGAAAGTGAAACACCGATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTAGGCACCCTAGTTATATAGCTCGTGAAGAAGAATCTGAGGCTAGCTCTCTTTCATTTGATAATAAACAATGCCTAATGAGTGAGGCATATACATCTTCTGGTGTCATTCTTATGCATAATGATTCCAGTGATATGAAGCTCTCATCTCAGGGAGTTGAAAAGGTCAGGAGCTCTGCTGGCCAAGGAATGCAGCAGGAGCTAATTATTAAAAGGCATGCTTTCTTACATTACAATAAACTTGACAAGTCTCAGCTTGAAAGAGTACAGATCCTTGGAAATCATGATTCACCACTGTGCGCAATAGATTTGAATGATGTAGTGAACTATGAAGAGTTTTTCAGTACCTTGACAAATGAAGAGCAGCAGCAATTACTGCAATTTCTTCCTGTGGTTGATACGGCTAAAATTCCTGATAGCCTTAAAGTCATGTTCGATAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGAGGGTGTCTTTGATATCTCTTTGTCGGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGACTTGCATTATCCAACCTGTCAAAATCAAAATGGGTAGAACACTACTATTTTCTAAAGAGATGTCAAAACAGAGCTGGAAAATCTGGTACTCCAGGATCTAGTGGTACAGAATCAACTAATGTTGCAAACATCAAGAGAATGCGTGATAGTCGATATCAAAACTTTCCAGAGAAGAAAACAATAATAAGGAGCCCCAAAAGAGTGATCACAAAGGGTGGCTGTGAGGGCAAAGAAGTTGTGGAAGATGGTGCTTGCTCTACTCCAAAAAGGCTATTTCCTTTGCCTTCTGCTGCTAGCTCACTCTTGATGGATTCTTTAAACTTTGCTGGGGAGAGTTCTGATCAGGATCTGCTGCTAGAGGTTCCATCTAATAGTTCTTTTCCACAAGCAGAGCTCCTGTACCCAACTTTAAGTTTTGGTGCTCAAGCCAGCACCAGTAGTAGCTCAGCATACCCTCATCTTGTCCATCATTAA 1653 0.4229 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYEDQRAPRVKSISLNKNKEVKSLKRKQNHDNVVSGGLAPDYNQGFQKAVDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCVGRPKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSYIAREEESEASSLSFDNKQCLMSEAYTSSGVILMHNDSSDMKLSSQGVEKVRSSAGQGMQQELIIKRHAFLHYNKLDKSQLERVQILGNHDSPLCAIDLNDVVNYEEFFSTLTNEEQQQLLQFLPVVDTAKIPDSLKVMFDSSQFKENLTYFQQLLAEGVFDISLSGAKPEDCKTLKRLALSNLSKSKWVEHYYFLKRCQNRAGKSGTPGSSGTESTNVANIKRMRDSRYQNFPEKKTIIRSPKRVITKGGCEGKEVVEDGACSTPKRLFPLPSAASSLLMDSLNFAGESSDQDLLLEVPSNSSFPQAELLYPTLSFGAQASTSSSSAYPHLVHH. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02789 550 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Seca9g02789 550 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Seca9g02789 550 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Seca9g02789 550 FunFam GATA transcription factor 27 3 85 - -
Seca9g02789 550 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Seca9g02789 550 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Seca9g02789 550 MobiDBLite consensus disorder prediction 103 124 - -
Seca9g02789 550 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Seca9g02789 550 MobiDBLite consensus disorder prediction 77 124 - -
Seca9g02789 550 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 305 414 IPR044867 -
Seca9g02789 550 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Seca9g02789 550 Gene3D - 299 395 IPR038108 -
Seca9g02789 550 PANTHER OSJNBB0038F03.10 PROTEIN 1 548 IPR044589 -
Seca9g02789 550 Pfam Asx homology domain 297 377 IPR028020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02789 Seca-Chr9 41346043 41352502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02789 1 527 C2C2-Gata Transcription Factor Family AT4G17570 52.150 5.14e-159 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca9g02789 ASXH 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02789 - - gmx:100803914 841.262