Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02788 ATGAATTTGGAGTCATCAAGAGCAATGGCAACATCAGTCAATAAAAGTCATTCTGAAGAAAGATTTGGGAAGCCATTGATGGAAAATGGGAACTGCACTCCGCTTGTTCGGCCCATGTATAAGAGGCGTAAAGTTTCCGCCATTCGTGATTTCCCAAAAGATTGTGGACCGTGTGCTTCAAAAATTGATCCAGTGTTAAAGGTAGATAATGCTGATTTTGGTTCTGCTAATGGTACAATTGTTGAGGATAAAAATGGTGAATGTTTAGGGGGTGACACTGTTAGAATTTCCAAGTGTGAAGATGATCCTCAACATTCTGAGTTAAAGGTAGATAATGCTGATTTTGGTTCTGTTAATGGTACAATTGTTGAGGATAAAAATGGTGAATGTTTAGGGGGTGACACTGTTAGAATTTCCAAGTGTGAAGATGATCCTCAACATTCTGAGTTAAGAAAAGATTTGTTTCATTTTGAGACTCTTGGCCAAACATTTGACTGTAGTTTGAAGAAAGAAAATCCTGTAGTCTCATCTCATCAAGTGGATGGGCCTACTTCAGCAAATGATGAGCCTGGAGAAGTGGCACCGGTAGGCATGGAGGTGTTGGATACAGAATTTGCAACAGAAAACTCTGTAGAACATGACTCTTATATATCAAAGCCATCTTCTACAGTGGGTGAGGTTGCTATGTCTGATGGTGAAAAATCATCATCATTTAATGTCTATTTAGATGGTTCTAGTGCTTGTTTGGAGGAGAGTGTAAGTAGAAGGTATCTTCCTCGAAGAAAAGTTTCAGCTGTCAGAAAGTTTCCTCTTTTTTGTGGACGCAATGCTCCACGTCTCAGTAAAGATGAGTGTCAAATGAAGATCTCTTCTTTGAATAATAAGAGAGTGGGTCAACAGAACTTGGCTGTAGATGACAATCCATTGAAAAGAGTAGCAGGCACTGATGTAAAAGAAGTGGAAAATAACATTCAAGCTGAACATGGTTGCAAGAGAAAGCTTGCGGACATTGTTCAAGCTGATTCTGGAGGGAATGCTACAGAGAAAGTTAAGAAGTCGGGTGTATTTGAACCATGTTCTGTGTCGAAATTGCCACTGGAAAACACAAGAGAAAAGTACAATACCCTTCCTGAAAAATGTAATCATCATCAGGTTGAAATTAATTCCAAGGCAGTCGTTAAAGAGGAAACTAGAGATACTGTACAGGTTGAGGGAACATCAGGGCTAGAGTTGATAGTTTACCCAGAAGTCCAGGGTCTTAAGACAAAGCCTTTGGATATGTCTAGTTATCAGCGTGAGTCAAAAGGAGATTTGAATAGATTGGTGGTCTCATCAGACAGGAAAGTAGTGTTAGGTCTGATGTCTGAATCAGAGTGTCCTTCGAGGTCTGCTGATAAAGGTTCTTCCAAATTTAAGTTGATTGGTGGTACAAATGAAAGCAAGGGAAAGAGAGTTGATTTTGCTGCACGGCTAGGCAGGTCTAAAACTGCTATCAAGACTAAAGATGCACAGAATCATTCTGGGCAGAAGCTGTTGAAAAAGAAAAAAGGAAACACTGCTTCTGATGATATGGGTCAATTAGTGATTTGGGAAAAAGATTCTCCTGACCCTAATGAAAACAACAAAGACTTTCAAATTGTCCCAAAATCACATGGTTTGGATGTATATGTTCCTCCTTTGGATTATCGTAATTCCAGTGGTCATGAGAATGACTCAAATGTGACCCGAAATAAAGTGAGGGAAACATTACGCCTTTTTCAAGCTGTTTCTAGAAGGCTTTTGCATGAAGTTGAAGCTAAGTCAGATGAGAAATCGAGTAATAAAAAGAGGATTGATTTACATGCTGCGAAGATCCTTAAGGAGAAAGGGAAATATGTTAATACAGGCAAGCAGATCTTGGGATCTGTCCCAGGGGTTGAGGTTGGTGATGAATTTCAGTACAGGGTGGAGCTTACTGTAATTGGCCTTCATCGCCAGATTCAGGGAGGTATAGATTATGTAAAGCACAATGGGAAGATCCTTGCAACTAGCATTGTTGCATCAGGGGGCTATGCTGATGAGTTGGATAATTCAGATGTTTTGATATATACAGGGCAGGGTGGGAATGTGATGAACACTGATAAAGATAAAGAACCTGAAGATCAAAAGCTTGAACGGGGCAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGAGTGATACGTGGCTCCGAATCAATGGATGGAAAATGTAAGACTTATGTTTATGATGGACTGTATCTAGTTGAGTCATGTTGGCAGGATATGGGGCCACATGGGAAACTGGTTTATAGGTTTCGCCTGCGAAGAATCCCAGGTCAACCAGAGCTTGCTTTAAAGGAAGTGAAGAAATCTAAAAAGTTCAAAACAAGAGAAGGTCTATGTGTTGATGATATTTCTTATGGTAAAGAGCGAATTCCCATATGTGCTGTGAACACCATAGATGATGAAAAACCCCCACCCTTTACATACATAACCGACATGATATATCCTGATTGTTGCAATCTTGTTCCTCCAGAAGGATGTAATTGTACTAATGGATGCTCTGACTTAAAGACATGTTCTTGTGTAGTAAAAAATGGGGGAGAGATCCCATTCAACCATAATGGGGCTATTGTAGAAGCAAAGCCTTTAGTCTACGAGTGTGGACCTTATTGTAAGTGCCCTTCAACCTGCCATAACAGAGTCAGCCAGCTTGGAATAAAGTTTCAACTTGAAATTTTTAAAACCGATACAAGGGGATGGGGTGTAAGATCCCTAAATTCCATCCCTTCAGGAAGTTTTATCTGTGAATATATAGGAGAGGTTCTTGAAGAAAAGGAAGCTGAAGAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTACAGCAACAGTAATCTTTGGGATGGACTTTCGACCCTCATGCCAGATGCACAATCAAGTTCTTCTGAAGTTGTGAAGGATGGTGGCTTCACCATTGATGCTGCTCAGTTTGCTAATGTGGGGAGATTCATCAACCATAGTTGCTCTCCTAATCTTTATGCTCAGAATGTCCTTTATGATCATCATGACAAAAGGATCCCTCACATAATGTTCTTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGGCTTACGATTACAATTATATGATGGATCAAGTCCGTGATTCTGATGGCAATATAAAAAAGAAAGAATGCTTTTGTGGTTCTGTGGAATGTACTGGTAGGATGTATTGA 3258 0.3987 MNLESSRAMATSVNKSHSEERFGKPLMENGNCTPLVRPMYKRRKVSAIRDFPKDCGPCASKIDPVLKVDNADFGSANGTIVEDKNGECLGGDTVRISKCEDDPQHSELKVDNADFGSVNGTIVEDKNGECLGGDTVRISKCEDDPQHSELRKDLFHFETLGQTFDCSLKKENPVVSSHQVDGPTSANDEPGEVAPVGMEVLDTEFATENSVEHDSYISKPSSTVGEVAMSDGEKSSSFNVYLDGSSACLEESVSRRYLPRRKVSAVRKFPLFCGRNAPRLSKDECQMKISSLNNKRVGQQNLAVDDNPLKRVAGTDVKEVENNIQAEHGCKRKLADIVQADSGGNATEKVKKSGVFEPCSVSKLPLENTREKYNTLPEKCNHHQVEINSKAVVKEETRDTVQVEGTSGLELIVYPEVQGLKTKPLDMSSYQRESKGDLNRLVVSSDRKVVLGLMSESECPSRSADKGSSKFKLIGGTNESKGKRVDFAARLGRSKTAIKTKDAQNHSGQKLLKKKKGNTASDDMGQLVIWEKDSPDPNENNKDFQIVPKSHGLDVYVPPLDYRNSSGHENDSNVTRNKVRETLRLFQAVSRRLLHEVEAKSDEKSSNKKRIDLHAAKILKEKGKYVNTGKQILGSVPGVEVGDEFQYRVELTVIGLHRQIQGGIDYVKHNGKILATSIVASGGYADELDNSDVLIYTGQGGNVMNTDKDKEPEDQKLERGNLALKNSSEEKNPVRVIRGSESMDGKCKTYVYDGLYLVESCWQDMGPHGKLVYRFRLRRIPGQPELALKEVKKSKKFKTREGLCVDDISYGKERIPICAVNTIDDEKPPPFTYITDMIYPDCCNLVPPEGCNCTNGCSDLKTCSCVVKNGGEIPFNHNGAIVEAKPLVYECGPYCKCPSTCHNRVSQLGIKFQLEIFKTDTRGWGVRSLNSIPSGSFICEYIGEVLEEKEAEERTGNDEYLFDIGNNYSNSNLWDGLSTLMPDAQSSSSEVVKDGGFTIDAAQFANVGRFINHSCSPNLYAQNVLYDHHDKRIPHIMFFAAENIPPLQELAYDYNYMMDQVRDSDGNIKKKECFCGSVECTGRMY. 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02788 1085 SMART set_7 912 1061 IPR001214 GO:0005515
Seca9g02788 1085 MobiDBLite consensus disorder prediction 500 519 - -
Seca9g02788 1085 ProSiteProfiles Post-SET domain profile. 1069 1085 IPR003616 -
Seca9g02788 1085 SMART PostSET_3 1069 1085 IPR003616 -
Seca9g02788 1085 ProSiteProfiles YDG domain profile. 634 779 IPR003105 -
Seca9g02788 1085 ProSiteProfiles Pre-SET domain profile. 849 909 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca9g02788 1085 Gene3D - 615 799 IPR036987 -
Seca9g02788 1085 SMART preset_2 805 896 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca9g02788 1085 SMART G9a_1 629 783 IPR003105 -
Seca9g02788 1085 SUPERFAMILY PUA domain-like 615 792 IPR015947 -
Seca9g02788 1085 SUPERFAMILY SET domain 795 1056 IPR046341 -
Seca9g02788 1085 Pfam SET domain 923 1055 IPR001214 GO:0005515
Seca9g02788 1085 ProSiteProfiles SET domain profile. 912 1055 IPR001214 GO:0005515
Seca9g02788 1085 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 439 1078 - -
Seca9g02788 1085 Gene3D SET domain 800 1085 IPR046341 -
Seca9g02788 1085 MobiDBLite consensus disorder prediction 1 16 - -
Seca9g02788 1085 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 249 1085 IPR025794 GO:0016571
Seca9g02788 1085 Pfam Pre-SET motif 808 904 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca9g02788 1085 MobiDBLite consensus disorder prediction 1 25 - -
Seca9g02788 1085 Pfam SAD/SRA domain 633 783 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02788 Seca-Chr9 41335884 41341161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02788 573 1082 Su(var)3-9 homologs AT5G04940 41.794 4.37e-121 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca9g02788 SAD_SRA 5.6e-52 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02788 K11420 - gmx:100803378 1384.39