Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02778 ATGGAGGAACGGTATGAGCCATTGAAGGACCTTGGTTCGGGGAACTTCGGAGTCGCCAAGCTAGCCAAAGACAAGAACACAGGGGAGCTTGTTGCTGTCAAATACATTGAAAGGGGAAAAAAGATTGATGAGAATGTTCAAAGGGAGATAGTTAACCACCGATCTTTAAGGCATCCAAATATTGTCAGGTTCAAAGAGGTGAGAATTTGTTTTTGTACCTTAAACTGTTCCTTCATTGTATTTCTGACCCCAACTCATTTAGCTATTGTCCTGGAGTATGCTGCTGGTGGTGAACTCTTTGAGAGGATATGCGCCGCTGGTCGATTGAGTGAAGATGAGGCAAGATATTTCTTCCAGCAACTATTATCTGGAGTTAGCTATTGTCATTCCATGCAAATTTGTCATAGAGATCTGAAATTGGAAAACACTCTGTTGGACGGAAATCCAGCTCCAAGACTTAAAATTTGTGACTTTGGTTTCTCCAAGTCCGCTTTACTGCACTCTCAACCTAAATCCACAGTTGGAACTCCTGCATACATTGCTCCAGAGGTTTTGTCACGAAAGGAGTATGATGGAAAGATTGCAGATGTTTGGTCATGTGGTGTGACTCTTTATGTCATGTTAGTTGGATCATACCCATTTGAAGATCCAGAAGATCCTAGAAATTTCAGAAAGAATGTTGGGAGAATAATGAGTGCTCAATACGCCATACCTGACTATGTCCGTGTATCTGCAGAGTGTAGGCATCTTCTCACTCGTATCTTTGTTGCCAATCCTGCCAAAAGGATCACCATCTCTGAGATAAAACAGCACCCTTGGTTTCGGAAGAACTTGCCTAGAGAGATAATTGAGGCTGATAAAAAAGGTTACGAGGAAACAGAGAAAGACCAACCAAGCCAAAGTGTAGAAGAAATCATGCGAATCGTACAAGAGGCAAGGACACCAGGGCTAAAAACCACAGGCTCATCGGACGCTGTGGATGTTGATGAGGCTGTAGAGGAAGTTGATGTCAGTGGCGACTATGCAAAACTCGTGTAA 1038 0.4297 MEERYEPLKDLGSGNFGVAKLAKDKNTGELVAVKYIERGKKIDENVQREIVNHRSLRHPNIVRFKEVRICFCTLNCSFIVFLTPTHLAIVLEYAAGGELFERICAAGRLSEDEARYFFQQLLSGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGSYPFEDPEDPRNFRKNVGRIMSAQYAIPDYVRVSAECRHLLTRIFVANPAKRITISEIKQHPWFRKNLPREIIEADKKGYEETEKDQPSQSVEEIMRIVQEARTPGLKTTGSSDAVDVDEAVEEVDVSGDYAKLV. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02778 345 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Seca9g02778 345 CDD STKc_SnRK2 4 273 - -
Seca9g02778 345 SMART serkin_6 5 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02778 345 Pfam Protein kinase domain 5 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02778 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Seca9g02778 345 Gene3D Transferase(Phosphotransferase) domain 1 94 282 - -
Seca9g02778 345 PANTHER SERINE/THREONINE KINASE 3 300 - -
Seca9g02778 345 ProSiteProfiles Protein kinase domain profile. 5 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02778 345 FunFam Serine/threonine-protein kinase SRK2E 94 282 - -
Seca9g02778 345 SUPERFAMILY Protein kinase-like (PK-like) 3 282 IPR011009 -
Seca9g02778 345 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02778 Seca-Chr9 41282840 41287227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02778 4 284 CBL-interacting serine-threonine protein kinases AT4G24400 42.414 2.76e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca9g02778 Pkinase 5.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02778 K14498 - gmx:547790 570.081