Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02772 ATGATTGTTATCTCTTCTGTGCTTCACTACAACCTAACCATGCAGATGAAGGGCATTGCAGGGAGAACTCGCTCTTCTACTACACGCAAATTACTCGATGAGGTTCTTGATTGCACTTCCCTCGACGACGTCATTGTTATTCAACAACACACCGAGCGTGTGGATGAAGATCAAAGAAAAACCAAGTTCAAGCGCCAAAAGGAAATCGCCAACGGTGACTCTGGAACGATCAAGAGGAGGAAATCGTACGGTCTCGATATTTTGATCGACGACAATGCCAACGAGAAGAGTTCGTGTGTGGCACCAGCACAGAGGACTCGTTCCCATTATCGAAAGATTAACAAGATTTTGAAGTTGGGAACTTTGAGTAAGCCTATATGTCTTGATGAAGAAGAGAATCTTATATCTCTCTCTGAGTCTGATCATGATTCTTGTGGGGTAAGTGGTTTGTTTGATGATGATGATGATGATGATGATGATGATGAAGAAGAAGAATGTAGTAGTGGTGACGATAGTGAAAGGGAAGGGAAGGAGAGGAAAAGACAAGTTAATGACTCTAAAGTGTTTAAGGTTCTTCGAGATTCTGTGTATGGGAAGGAATCGAATTTAAATGTGGATTTGCCTTTAAAGTTTTCTTCTTTAGGTAAGGAGAAATCAGTGTATGAGACAGAGATAGATCAACTTTGGGATGAGATGGCCTCTGTTCTTCAAGAGGGAAGTGGTTCTGTTCAAGAAAATTCCAGTGGTGGCAGTAGAGAATGTGTCCATGGTCAGAGAGGGGCAAGAGGTGATGAACTGAATGCAAAGAAAGATTTGCTGCCATTGGTGTTTGGTTTTCAAAAGGAGAAGCCAAAACCAGCTGAGAAATCAAAAGAGGAGAAAGAATTAGATGCACTTTGGCTTGAGATGGACTACTGTATTGCTCTTATTGCCCAAGACAATCAGGTTAGTTCCTCTCTCTATATTTTTTGTTTTGCTTATCAGCAGGTTCAGAATAATGCTGATTCTGATCATGATCAATATCCAACGGGTGAAGTTACACAAGTTACTCTTTGTCGTCAAGGGAAGCATGATCTCATTCTTGATGAGCAAATTGGACTAATATGTATATGTTGCTCACATATACAAGTACATATCAGGGATTATTCACCTCCTGTTATTGAAAATCCACGGGGTAAGTCAAACAGGAGAGACTCTTACACTTTGGACCATGTGAATCACTCTGTTATCAAGGAGCTTCAGCATGGAGTTGGTGGACATGATGATGATCATAACCCCAGTGATTACACCGGGACAGTGTGGGATATAATTCCTGGAATCAAGAAAACTATGTATCCTCATCAGTGTGAGGCTTTTGAATTTCTCTGGAGTAATTTAGCTGGTGGAATTCTTCTTGATAAGTTGAAAGAGCAAAAGGAATTTCCTGGTGCAAGTGGGTGTCTTGTATCTCATGCTCCTGGCACTGGGAAAACCCGTCTCACTATTGTGTTTCTTCAGACATACATGGAGTTATATCCAACATGTAGACCAATAATTATTGCTCCCACAGGGATACTTCGTACATGGGAAGAGGAATTTAAAACATGGAAGGTTGACATTCCCTTTTACAATTTGAACAATTCTGACTACTCTGGCAAGGAGAGTGAGGTAGCTATGAATCTTATTAAGAATGTCTCAAGTAATGCAGCTAAGTCATATTGTCGTTTAGTCAAGTTGTATTCCTGGAAGTATAACAAAAGCATCTTGGGAATTAGCTACAAACTGTTTGAGCATCTTACTAGGGAGGGCTCAGATGAAAGGGAACTCCTTCTTGAACATCCTGGTTTATTAGTTCTGGATGAGGGTCACACTGCTCGTAATTCTCGAAGTTTTATATTGAAAGCTGTCTCAGAAGTCCAGACAAAAAAACGCATCATCCTCTCTGGAACTCCCTTTCAGAATAACTTTGAAGAGCTATACAACACACTCTGCTTGGCAAGGCCTAAGTTTGCTGAATGGAATCCATCTGGAGGCAAGGATGTATTTGATGACAAGCGGGGGAACCCAAGAAATGAAAGCAAAGGGAAATGGGTGTCTCTGGCCAATTCATTGGGCAAAGTTACTGATGATAGTGAAAGATTTAAGATATCAGAAGAGATCAGAAACATGATTCTTCCTTTTGTTCATGTACACCAGGGAACCATACTGCAAGAGAGTCTACCTGGTTTGAGGAAGTTGGTAATTATTTTGAAGCCAACACAGTTGCAGAAGGAGGTTTTTGAGGATATTCAGAAAAAAAGGAAAAGCTTTGCATGGGATGTGCTAAAACTAGAATATGAGGAGTCTGTAACTGCTATTCATCCTGCCCTCTTTGGTCTATCTGAATGCAACAAGTTTGAAAGGTTTAGATTGAATCCTGAGGAAGGTGTAAAAACTAAATTTGTAATGGAACTTATCAGGCTTAGTGGGCTTGTGAAGGAAAAAGTTTTGGTTTTTAGCCAATACATTGATCCTTTGAAGCTTCTGGCAAGCCAACTTAAATATCATTTTGGTTGGAATGAAGGAAGGGAGGTGTTACAAATGCATGGAAAAGTTGATGCAAAGCAGCGTCAAGCTTCAATCAGAGATTTCAACGATCCCAGTGGCAAAGTGAAGGTAATGTTAGCATCAACCAAGGCTTGTTATGAAGGAATCAGTTTGGTTGGTGCCTCAAGGGTTGTTTTACTTGATGTTGTATGGAATCCCTCGGTGGAGAGGCAAGCTATAAGTCGTGCTTACCGGCTTGGACAGAAGAAATTTGTGTACACTTACCATTTGATCACAGCAGGGACAAGGGATGAGGAGAAATGTTGTCGGCAAGCTCAGAAAGATCACCTATCCCAGTTGGTGTTCTTTAATTCTGATGGGGCTCAGCATTGTCAAAATTTTTCATCTGCAGAATTGGAGGATCAAATTTTGGAAGACATGATTCAACATGAAAAGTTTGGACATATATTTGAAAAAGTAGCTATTAACTATCAAGAAACAAACTCTACCTTGAAGAGGGATTTTTTCTCCCTCTTGGTATAA 3048 0.4042 MIVISSVLHYNLTMQMKGIAGRTRSSTTRKLLDEVLDCTSLDDVIVIQQHTERVDEDQRKTKFKRQKEIANGDSGTIKRRKSYGLDILIDDNANEKSSCVAPAQRTRSHYRKINKILKLGTLSKPICLDEEENLISLSESDHDSCGVSGLFDDDDDDDDDDEEEECSSGDDSEREGKERKRQVNDSKVFKVLRDSVYGKESNLNVDLPLKFSSLGKEKSVYETEIDQLWDEMASVLQEGSGSVQENSSGGSRECVHGQRGARGDELNAKKDLLPLVFGFQKEKPKPAEKSKEEKELDALWLEMDYCIALIAQDNQVSSSLYIFCFAYQQVQNNADSDHDQYPTGEVTQVTLCRQGKHDLILDEQIGLICICCSHIQVHIRDYSPPVIENPRGKSNRRDSYTLDHVNHSVIKELQHGVGGHDDDHNPSDYTGTVWDIIPGIKKTMYPHQCEAFEFLWSNLAGGILLDKLKEQKEFPGASGCLVSHAPGTGKTRLTIVFLQTYMELYPTCRPIIIAPTGILRTWEEEFKTWKVDIPFYNLNNSDYSGKESEVAMNLIKNVSSNAAKSYCRLVKLYSWKYNKSILGISYKLFEHLTREGSDERELLLEHPGLLVLDEGHTARNSRSFILKAVSEVQTKKRIILSGTPFQNNFEELYNTLCLARPKFAEWNPSGGKDVFDDKRGNPRNESKGKWVSLANSLGKVTDDSERFKISEEIRNMILPFVHVHQGTILQESLPGLRKLVIILKPTQLQKEVFEDIQKKRKSFAWDVLKLEYEESVTAIHPALFGLSECNKFERFRLNPEEGVKTKFVMELIRLSGLVKEKVLVFSQYIDPLKLLASQLKYHFGWNEGREVLQMHGKVDAKQRQASIRDFNDPSGKVKVMLASTKACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEEKCCRQAQKDHLSQLVFFNSDGAQHCQNFSSAELEDQILEDMIQHEKFGHIFEKVAINYQETNSTLKRDFFSLLV. 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02772 1015 SMART helicmild6 833 922 IPR001650 -
Seca9g02772 1015 MobiDBLite consensus disorder prediction 150 169 - -
Seca9g02772 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 670 IPR027417 -
Seca9g02772 1015 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 471 662 IPR014001 -
Seca9g02772 1015 SMART ultradead3 440 675 IPR014001 -
Seca9g02772 1015 Pfam SNF2-related domain 477 764 IPR000330 GO:0005524|GO:0140658
Seca9g02772 1015 MobiDBLite consensus disorder prediction 139 181 - -
Seca9g02772 1015 MobiDBLite consensus disorder prediction 241 260 - -
Seca9g02772 1015 Gene3D - 734 1008 IPR027417 -
Seca9g02772 1015 Gene3D - 421 694 IPR038718 -
Seca9g02772 1015 CDD SF2_C_SNF 804 933 - -
Seca9g02772 1015 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 810 963 IPR001650 -
Seca9g02772 1015 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 25 997 IPR044567 GO:0080188
Seca9g02772 1015 Pfam Helicase conserved C-terminal domain 815 922 IPR001650 -
Seca9g02772 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 957 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02772 Seca-Chr9 41240875 41244597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02772 809 976 RAD5 or RAD16-like Gene Family AT5G43530 36.310 9.00e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca9g02772 SNF2_N 1.9e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02772 K10875 - mof:131164512 764.607