Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02771 ATGAAGTGTTTATTCTTCTTCAAACAAAAATCCAAATTGGACCCAGAATTAAACCGAAGCAAGAAGAAAAATCAGGTGGTGAATCGAGCCACAAGGTCCCCCAATATGCAATCACCACCGAAGAGCGTAAAAGAATTGTACAAAGAGAAAGAGCACAATTGCAGAGTTTTTACTTTGCAAGAGCTCGTAGATGCAACAAATGGTTTCAATAGGATGCTGAAGATTGGAGAAGGGGGTTTCGGGAACGTATACAGAGGAACAATTACTCCTCAAAACGGACAAGGTGACCCAATTGTCGTTGCAATCAAAAAACTTAACACTCGTGGCTTACAGGTAATTATGGCAATACTTTACAAATATATATACGTGTTTTCTCATGTTTGTTTTTTCCTCTTTGTAAAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTCAATCACCCGAATTTGGTTAAGCTTTTGGGATACTGCTCTGTAGATAGTGAAAGAGGAATCCAACGGCTGTTAGTGTATGAGTTCATGTCCAATAGGAGCCTGGAAGATCATCTTTTCAGTCGTTCTTTACCTCCATTGCCTTGGAAAACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTACAGTATCTACATGACGGATTGGAGGTTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTGCTGTTGGACACAAAATTCCACCCCAAGCTCTCAGATTTTGGTCTTGCTAGGGAGGGCCCAACAGGCGATCGGACTCATGTATCTACTGCGGTAGTGGGGACACGGGGATATGCTGCCCCAGAGTATGTTGAAACAGGTCACCTCAAAATTCAGAGTGATATTTGGAGTTTTGGTGTGGTACTTTATGAGATCCTCACAGGGAGACGAACATTGGAAAGAAACCTTCCAACAGCAGAACAAAAGCTAATAGAATGGGTTAAAAATTACCCTGCTGACAGTAGCAGATTCAGCAAGATAATGGATCCGCGTCTCAGGAATCAATATTCACTTGATGCAGCTAGGAGAATAGCAAGGTTGGCAGATAGCTGCTTAAAGAAGAATCCTGAAGATAGGCCATCCATGAGTGAGATAGTGGAAAGTTTGAAGCAAGCATTGCAGTGTTCACAAACAGAATCTTCAAACTCAAATACTACTCAGTCTCAGAATATGACTTCTCAATCCCCTCGGTCTAAATTGGTTCGGAAGTGA 1224 0.4183 MKCLFFFKQKSKLDPELNRSKKKNQVVNRATRSPNMQSPPKSVKELYKEKEHNCRVFTLQELVDATNGFNRMLKIGEGGFGNVYRGTITPQNGQGDPIVVAIKKLNTRGLQVIMAILYKYIYVFSHVCFFLFVKGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDSERGIQRLLVYEFMSNRSLEDHLFSRSLPPLPWKTRLQIMLGAAQGLQYLHDGLEVQVIYRDFKSSNVLLDTKFHPKLSDFGLAREGPTGDRTHVSTAVVGTRGYAAPEYVETGHLKIQSDIWSFGVVLYEILTGRRTLERNLPTAEQKLIEWVKNYPADSSRFSKIMDPRLRNQYSLDAARRIARLADSCLKKNPEDRPSMSEIVESLKQALQCSQTESSNSNTTQSQNMTSQSPRSKLVRK. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02771 407 PANTHER OS01G0588500 PROTEIN-RELATED 32 377 - -
Seca9g02771 407 Gene3D Transferase(Phosphotransferase) domain 1 178 402 - -
Seca9g02771 407 MobiDBLite consensus disorder prediction 17 42 - -
Seca9g02771 407 Gene3D Phosphorylase Kinase; domain 1 47 177 - -
Seca9g02771 407 ProSiteProfiles Protein kinase domain profile. 69 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02771 407 SUPERFAMILY Protein kinase-like (PK-like) 52 383 IPR011009 -
Seca9g02771 407 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 178 388 - -
Seca9g02771 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Seca9g02771 407 ProSitePatterns Protein kinases ATP-binding region signature. 75 104 IPR017441 GO:0005524
Seca9g02771 407 MobiDBLite consensus disorder prediction 377 407 - -
Seca9g02771 407 Pfam Protein kinase domain 71 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02771 407 CDD STKc_IRAK 75 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02771 Seca-Chr9 41216820 41219811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02771 1 373 Glycoside Hydrolase AT3G07070 40.260 7.84e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca9g02771 Pkinase 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02771 - - gmx:100305403 580.867