Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02765 ATGCGTTTGCGATTATTGACCTGCCCCTTTGCATTGCTAAACACTACTCGTACCTTTAATTCCCTCATCCATTTCCCACCTTGTTACCAGTACCATTCCTCCCTCTCACCTTCTTTCTCTCGCCCCTTCATATTCTCATCAACAACCTTTGCCTTATTTATTCATCTATCTTCTCAACTAGAATATCCCATGGCCGTTCAAGCCCAATACCCCTCCAATGTACTCTTCCTAAACAGCAGCAAAAACGAACAAGAAGGACATGACTGTTCATTGCAACCGCAACCAGGAGGACTCCTTGATCAATCCCATTCCCACATGTTTTTCAACAATGGAGGTATATTTTGTGATCAAACAGGTGCTAATTCTAGGAAGAGAGGAAGAGAAGCAACAACCACCCCACTGGTTGGGCACACATCTCCAAATAATGTCATGAATCCATTCTCCTTGCAATCTCACTCTCCACAGCTTATAGACCTAACTCAACTCCATAATCAGCAACAACAAAATCAAAATGTAGTCTCCACTGGCCTAAGATTAGCCTTTGATGATCAACAACAACAACAAAGACTACAGTTGCATAATCATCAACAGCAGCAACAATCCTCACCTTTCTTATCTTTATTATCCCAAGACTTGGCCTCACAAATCAAACAACAGAGAGACGAAATAGATGAATTTCTTCAAACACAGGGAGAACAATTGCGGCGAGTATTAGCAGAGAAGAGGCAGAGACATTATCGAGCACTTTTAAGCGCGGCGGAGGAATCGGTGGCACGGCGACTGAGGGAGAAGGAAGCAGAGATGGAAAAAGCTATGCGGAGGAACGCGGAATTAGAGGCACGGGCGGCGCAACTTAGCGTTGAGGCGCAGGTTTGGCAGGCGAAGGCGAAGGCGCAGGAAGCAACGGCTGCGGCTCTTAAAGCGCAACTGCAACAGGCTATGATGAGCGGTGGTGGTGAGGATGGTGGAGGGCTATCGTGCGCGGTGGGCGTAGAGGGACAAACGGAGGATGCTGAGTCAGCATATGTTGACCCGGAGAGGGTGGTGATGTCAGGTCCCAAATGTAGAGGTTGCGGGAAGCGTGTGGCATCGGTGGTGGTGTTGCCGTGTCGCCACCTATGCGTCTGCACTGAATGTGACAGACATTTCCGGGCATGCCCCGTTTGCCTCACTGTTAAAAATTCAACCGTTCAAGTTTTTCTATCTTAA 1209 0.4764 MRLRLLTCPFALLNTTRTFNSLIHFPPCYQYHSSLSPSFSRPFIFSSTTFALFIHLSSQLEYPMAVQAQYPSNVLFLNSSKNEQEGHDCSLQPQPGGLLDQSHSHMFFNNGGIFCDQTGANSRKRGREATTTPLVGHTSPNNVMNPFSLQSHSPQLIDLTQLHNQQQQNQNVVSTGLRLAFDDQQQQQRLQLHNHQQQQQSSPFLSLLSQDLASQIKQQRDEIDEFLQTQGEQLRRVLAEKRQRHYRALLSAAEESVARRLREKEAEMEKAMRRNAELEARAAQLSVEAQVWQAKAKAQEATAAALKAQLQQAMMSGGGEDGGGLSCAVGVEGQTEDAESAYVDPERVVMSGPKCRGCGKRVASVVVLPCRHLCVCTECDRHFRACPVCLTVKNSTVQVFLS. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02765 402 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 111 399 IPR017066 -
Seca9g02765 402 Coils Coil 254 316 - -
Seca9g02765 402 PIRSF SBP1_RNase_bind 63 402 IPR017066 -
Seca9g02765 402 ProSiteProfiles Zinc finger RING-type profile. 355 389 IPR001841 -
Seca9g02765 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 402 IPR013083 -
Seca9g02765 402 Pfam Zinc finger, C3HC4 type (RING finger) 354 391 - -
Seca9g02765 402 CDD mRING-HC-C3HC5_CGRF1-like 353 389 - -
Seca9g02765 402 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 337 401 - -
Seca9g02765 402 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02765 Seca-Chr9 41132012 41134204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02765 351 389 C3H Transcription Factor Family AT3G06140 41.860 7.74e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02765 K19042 - gmx:100779548 380.563