Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02742 ATGGTTTGCACTGCCAATGATTTACAGGGATGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGAAGGAGACAGTGGTTCTGCTGCTGAGATAAAAGCAAAGCTTGAGGCCATGGACTATAATGTTTCTACTTTCTACAATGAGAATGATGCCTTGTCAGCAATCTTAAGTAGTCCTGAAGGCTTCCATGTTGCTGTAGTAGAGGTGAATATAAGCAGTAGCCAAGGGGGTTTCAAATTTCTTGAGAATGCGAAAGACTTGCCAACCATTAGTAAGTACAGAACGAAGCCTAACTTTGCTGATTTTTATGTAGTGACTTCAAACAGTCAATGCCTGAACACGATGATGAAGTGTATTGCGCTTGGCGCAGTTGAGTTCCTCACTAAACCACTCTCTGAAGACAAGCTCAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGAAAGTGCTCTGTCTGAATCACTTAAACCTGTCAAAGAATCTGTAGAGTCCATGTTGCAGCTTCAATCAGAGAACAAACAACCTGAAAGTACAATTTCAATAGATTTAGAGAATGTGTCCAGGTACAGTGATAATGACCATGAGCAGTCTGCTGGAAATGATAAATATCCAGCTCCTTCAACACCACAATTAAAACAGGGGGCAAGGTTACTGGATGATGGGGATTGCCATGATCAGACTAATTCCTCAACAGAAAAAGAAACTGGGGAACATGATGGGGAATCTAAATCTGTCGAAACTTCATGTGAGAATTTGAATGGTGAAAGTTCTCCTCAACCAATTAAACCTGAGGAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAAGGGTGAGAGTGTTGTTTCAGTGGATCCACAGAATACAAAGTTTCTCAGCAATGCTGATGGTAACACAACTCCAAATAAAACAGGTGTTCTTAATGATTCATGTGAGAACAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGAACTGCACAAAAAATTTGTCAAGGCAGTGGGACAGTTGGGTATTGATCAAGCCATTCCTTCTCGAATATTGGAGCTGATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTACAGAAATATAGAATGCACAAGAGACAAATCATGCCTGGGGAAGAAGATCGAAAATGGCCAAATCAAAGAGATCCAATGCAAAGGAGCTATTGTCTGCAAAGACCAATCATGGCCTACCCTCCATATCATTCTAGTCACACCCTTTCACCAGCTCCTGTATATCCTATGTGGGGACAACCTGGCAGTCAAACAGCTAGTGTACAGATTTGGGGTCCTCATGGTTATCCCCAATGGCAGCCTATTGAAAGTTGGCACTGGAAGCCTTATCCAGGGGTGCATGTGGATGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAGCTCCTTGTTTTCCCTACACTCAAAATATAGCTGGGTTGCACAATGCTAAAGCAGTGGATTATAGATTTGGCATGCCACCACGAAGTTCCTTTGAGCATTATCCGGCAGAGGAGGTGGTGGACAGGGTTGTGAAGGAGGCAATAAGCAAGCCATGGCTACCATTACCCTTAGGCCTGAAACCTCCATCGATGGATAGTGTGTTGGATGAGCTCTCCAAGAAAGGCATATCCAGCATACCTTTTGGCGGCAATAAGGGTTCTAAACCCCACTGA 1716 0.4376 MVCTANDLQGWKDFPKGLRVLLLEGDSGSAAEIKAKLEAMDYNVSTFYNENDALSAILSSPEGFHVAVVEVNISSSQGGFKFLENAKDLPTISKYRTKPNFADFYVVTSNSQCLNTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAGESALSESLKPVKESVESMLQLQSENKQPESTISIDLENVSRYSDNDHEQSAGNDKYPAPSTPQLKQGARLLDDGDCHDQTNSSTEKETGEHDGESKSVETSCENLNGESSPQPIKPEETLIKEEEDFANGSKGESVVSVDPQNTKFLSNADGNTTPNKTGVLNDSCENKANRKKMKVDWTPELHKKFVKAVGQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQIMPGEEDRKWPNQRDPMQRSYCLQRPIMAYPPYHSSHTLSPAPVYPMWGQPGSQTASVQIWGPHGYPQWQPIESWHWKPYPGVHVDAWGCPVLPPPQAPCFPYTQNIAGLHNAKAVDYRFGMPPRSSFEHYPAEEVVDRVVKEAISKPWLPLPLGLKPPSMDSVLDELSKKGISSIPFGGNKGSKPH. 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02742 571 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 561 IPR044825 GO:0003700|GO:0045893
Seca9g02742 571 FunFam Two-component response regulator-like APRR2 17 157 - -
Seca9g02742 571 Gene3D - 18 159 - -
Seca9g02742 571 SUPERFAMILY CheY-like 16 150 IPR011006 -
Seca9g02742 571 MobiDBLite consensus disorder prediction 196 268 - -
Seca9g02742 571 MobiDBLite consensus disorder prediction 288 316 - -
Seca9g02742 571 SUPERFAMILY Homeodomain-like 326 384 IPR009057 -
Seca9g02742 571 Gene3D - 323 385 - -
Seca9g02742 571 MobiDBLite consensus disorder prediction 280 316 - -
Seca9g02742 571 ProSiteProfiles Response regulatory domain profile. 19 146 IPR001789 GO:0000160
Seca9g02742 571 MobiDBLite consensus disorder prediction 223 251 - -
Seca9g02742 571 MobiDBLite consensus disorder prediction 252 266 - -
Seca9g02742 571 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 324 383 IPR017930 -
Seca9g02742 571 Pfam Myb-like DNA-binding domain 330 379 IPR001005 -
Seca9g02742 571 FunFam Two-component response regulator 323 386 - -
Seca9g02742 571 NCBIfam myb-like DNA-binding domain, SHAQKYF class 327 382 IPR006447 GO:0003677
Seca9g02742 571 SMART REC_2 18 142 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02742 Seca-Chr9 40799553 40806600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02742 1 561 Response Regulator Gene Family AT4G18020 47.377 1.51e-138 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca9g02742 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02742 - - gmx:100784905 932.939