Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02731 ATGGCATCACTGCCTCCAGGTTTTCGTTTCCATCCAACTGATGAAGAATTGATAGGATATTACCTAAAAAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATTCCCGTGATCGATTTCTACAAATTTGATCCCTGGGAGTTGCCGGAGAAATCTTTCCTACCAAAAAGAGATTTGGAGTGGTTTTTCTTCTGTCCACGAGATCGCAAGTACCCAAATGGATCACGGACAAATAGAGCCACCAAAGCTGGATACTGGAAAGCTACTGGAAAAGACAGGAAGATTGTGTGTCCATTCACTTCCACTGAGACAGTGACAGGGTACCGTAAGACCCTTGTTTTCTATTGTGGAAGGGCACCCTTAGGAGATCGAACAGATTGGGTCATGCATGAGTATCGCCTTTGTGATGATCCTGCCCAAGGCTCACAGGTAAAGTTTTTGGGTGCTTTTGCTTTGTGCCGTGTTGTTAAAAAGAATGACAAGGCCAATGATTTCCAAGGACACAAGTGTAAAAGCAGAAGGGTTGGGAACAATTCCACTAATGGGAGGAATGACACAACAATGAGATTCTCTAATGAGCTCTCCATTATCTCTGGTGATATTTCCTCTCAGGTTAGTCAAATGTGCAGTGCCAGTGAGAGTCGTTATTCAAGTCCTATTGATTCTCCATGCAATGTTGCTCCATTGACTGGGTTTGAGCAAGCTTCCACAAACACCAATCCCTCTAGCTTCTGGCTCTCCCCTGATATGATTCTTGATTCTTCAAAGGACTACTCTCAAATACAAGATGTTGTTGGATATTTTCCACAGCATGACTTATCAAGTACAATGACACCTTGGCAATCATTTGAACATACAGAAATTTCACCCAGTTCATCCTACTCAAATTTTAATGGGGAAATTGAATTTTCTGATGATTTCAGTAAAATTGGCTGCATGTCACCTTACTCAGGACAAGGAAACTTCATGGACTTTTATGTGAATGAGGCTGTGCCTTATGAAAGTTATAACCAAATTAATTCAATCAGAGATCCAAAACAATTCTGA 1050 0.4133 MASLPPGFRFHPTDEELIGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKIVCPFTSTETVTGYRKTLVFYCGRAPLGDRTDWVMHEYRLCDDPAQGSQVKFLGAFALCRVVKKNDKANDFQGHKCKSRRVGNNSTNGRNDTTMRFSNELSIISGDISSQVSQMCSASESRYSSPIDSPCNVAPLTGFEQASTNTNPSSFWLSPDMILDSSKDYSQIQDVVGYFPQHDLSSTMTPWQSFEHTEISPSSSYSNFNGEIEFSDDFSKIGCMSPYSGQGNFMDFYVNEAVPYESYNQINSIRDPKQF. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02731 349 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Seca9g02731 349 FunFam Nac domain-containing protein 86 13 162 - -
Seca9g02731 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 234 - -
Seca9g02731 349 Pfam No apical meristem (NAM) protein 5 135 IPR003441 GO:0003677|GO:0006355
Seca9g02731 349 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Seca9g02731 349 ProSiteProfiles NAC domain profile. 4 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02731 Seca-Chr9 40703852 40706454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02731 2 303 NAC Transcription Factor Family AT4G17980 55.882 1.25e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca9g02731 NAM 1.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02731 - - adu:107487585 509.22