Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02729 ATGCCAGTTCCACTTGCCCCCTACCCACCTCCATATACTCCTCCAGAAGATGGTGCACAGAGTCAACTTGTGTGTTCCGGGTGTAGAAGCCTTCTGCTCTATCCAGTTGGAGCCACCTCTGTGTGTTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCCGGCACAGAAATGGCCCAGTTGGTTTGTGGAGGCTGTCACACTTTCCTCCAGTACATCCGTGGAGCAACAAGTGTGCAATGCTCTTGTTGTCACACAATCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGTAAGATGCTACTCATGTACCAGTATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGCAACATCAATTGGGGCCTCAACAAGCATCACTGAACAGAAATTCAGCACCTAA 429 0.4895 MPVPLAPYPPPYTPPEDGAQSQLVCSGCRSLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTFLQYIRGATSVQCSCCHTINLALEANQVAHVNCGNCKMLLMYQYGARSVKCAVCNFATSIGASTSITEQKFST. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02729 142 PANTHER PROTEIN LSD1 14 52 IPR040319 -
Seca9g02729 142 Pfam LSD1 zinc finger 64 88 IPR005735 -
Seca9g02729 142 Pfam LSD1 zinc finger 102 124 IPR005735 -
Seca9g02729 142 Pfam LSD1 zinc finger 25 49 IPR005735 -
Seca9g02729 142 NCBIfam zinc finger domain, LSD1 subclass 61 90 IPR005735 -
Seca9g02729 142 NCBIfam zinc finger domain, LSD1 subclass 99 125 IPR005735 -
Seca9g02729 142 NCBIfam zinc finger domain, LSD1 subclass 22 52 IPR005735 -
Seca9g02729 142 SUPERFAMILY Multiheme cytochromes 39 123 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02729 Seca-Chr9 40689953 40692495 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca9g02729 zf-LSD1 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02729 - - cit:102618163 257.684