Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02718 ATGGAGCAATTAAACACACAAAGGGAGGCATCATCACCCAGCTGGTTATCTGATTTGCTGTTGCAGGAAATGGAGGAGCAGGATTGCAATTTGCTTCAACAATGCCACCCCAGCTTGCTTGGCGATGAAGAGTTACTTTCTCTTGACATCGCAAGTGCTCTTCACCAACCTTTGTCTTCCGAGAGCTACACTTCTTATCCTCCTGCTTACACTTCCATAGATGAAACCAGGCCTCGCAAGCACCATAAAACCCAACATCTTTCCCCTTCTTCTTCATCCCCCTCCGATTCCCCCACCTCCCACCGCCTCTCTTTTGACAACTCAAACTTTTATGGGCTTGACTTTGAGCTTAACCCAAAACAGAACGAGGTCGTTTCAGTCTCACCTCCTCAAACCCAAAAGGACTCATCACAAGACGAAAACTTTGAAAGTATAATAAATCCACAAGACCAACAAGGGACCAAGAGATCTCCTGCTCACACTCAAGATCACATCATAGCCGAGAGAAAGCGAAGAGAGAAGCTCAGCCAGAGCTTAATTGCTCTTGCAGCCCTTATTCCCGGCTTAAAGAAGATGGACAAGGCTTCAGTCCTAGGAGACGCTATCAAGTACGTGAAAGAGCTCCAAGAGCGTTTGAGGTTACTGGAAGAGCAGAGCAAGAACAGAGAGGTAGAGTCTGTGGTGATGATCAATAAACCAACGCTCATCAGCTGCGACGATCATTCATCCGATGATGGTGGTAATGGGGATGAACCACCGCTCCCCCATGTGGAAGCAAGAGTGTCAGAGAAGGACGTGCTCCTTCGCATCCACTGCCAAAACCAAAAGGGGCTTTTACTCAAAATACTAGACGAGGTTCAAAAACTTCATCTCTTTGTTGTCAATAGCAGTGTCCTACGTTTTGGGGACGCTATCCTTGACATAACCATTGTTGCTCAGATGGGCACAGGCTACAACTTGACCATAAACGATCTTGTAAAAAACTTACGCGTGGCTACATTGAGATCCATGTCATGA 1017 0.4661 MEQLNTQREASSPSWLSDLLLQEMEEQDCNLLQQCHPSLLGDEELLSLDIASALHQPLSSESYTSYPPAYTSIDETRPRKHHKTQHLSPSSSSPSDSPTSHRLSFDNSNFYGLDFELNPKQNEVVSVSPPQTQKDSSQDENFESIINPQDQQGTKRSPAHTQDHIIAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKELQERLRLLEEQSKNREVESVVMINKPTLISCDDHSSDDGGNGDEPPLPHVEARVSEKDVLLRIHCQNQKGLLLKILDEVQKLHLFVVNSSVLRFGDAILDITIVAQMGTGYNLTINDLVKNLRVATLRSMS. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02718 338 MobiDBLite consensus disorder prediction 87 103 - -
Seca9g02718 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Seca9g02718 338 Gene3D - 149 210 IPR036638 GO:0046983
Seca9g02718 338 MobiDBLite consensus disorder prediction 60 103 - -
Seca9g02718 338 PANTHER BHLH TRANSCRIPTION FACTOR 14 334 - -
Seca9g02718 338 Coils Coil 198 225 - -
Seca9g02718 338 CDD bHLH_AtNAI1_like 160 232 - -
Seca9g02718 338 SMART finulus 165 214 IPR011598 GO:0046983
Seca9g02718 338 MobiDBLite consensus disorder prediction 237 256 - -
Seca9g02718 338 Pfam Helix-loop-helix DNA-binding domain 163 209 IPR011598 GO:0046983
Seca9g02718 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 222 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02718 Seca-Chr9 40528584 40531713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02718 12 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.108 1.47e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g02718 HLH 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02718 - - gmx:100816551 343.969