Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02716 ATGATGGAAATTGCGTCCCCTAACTATTTCCCCGAACTTGGAATGGAGGATCCAACCTTCTTTCATCAATACCCGATGGATTCTTTTGCATGTCCACTCGATGACTTTGACTTGCAGTGTTTCAACTACGAAAGCACACCAAATTTTTTCCCTGCTCAAAGTCCTGTTGCCCCTGCAAGACCAACCAAGAAGCTCAAGATCACTTCCTGCACCCCCAATCCTGACCTTCCTTCCTCCCAACTTATTTCTTTTGAGCACTTCAATGCACCATCATCAATTTCTTCCCAGCAATTTCACAACCTGGATTCCAATATCAAGCCTAAAATCGAGAATATCGAAGCTCTGATTTCATATGAGGACAAACTTTTCTCAAATCATGATAATCGAGCGAACCACCAGCAGGTTGCCATCACCACAACCAGGAATCCAATCCAAGCTCAAGAACACGTAATAGCCGAAAGAAAACGTAGGGAAAAGCTCAGCCAGAATTTCATTGCTCTTTCCGCCATAGTTCCTGGCCTCAAGAAGATGGATAAGGCTTCTGTGTTGGGAGATGCTATCAAGTATGTGAAACAACTAAAGGAGCGTGTGCAGACTCTGGAGGAACAAGCGGCCACGAAATCGGCAGTCCTTGTAAAGAGATCTATTCTGTTTTCAGATGATGATAGCGATGACAGCTATGGAGACCAAGCACTCCCTGAAATTGAAGTTAGAGTTTCTGGTAAGGACGTGCTCATCAAGATTCAATGTGATAAACATAGTGGCCGTGCGGCTACGATACTCGCCCAATTAGAAAAGCATCATCTCACTGTACAGAGTAGCACCTTCTTGCCCTTCGGGAACAATATTATTGATGTAACTATTGTTGCTCAGGTTAATATAAATATTCACTAG 894 0.4351 MMEIASPNYFPELGMEDPTFFHQYPMDSFACPLDDFDLQCFNYESTPNFFPAQSPVAPARPTKKLKITSCTPNPDLPSSQLISFEHFNAPSSISSQQFHNLDSNIKPKIENIEALISYEDKLFSNHDNRANHQQVAITTTRNPIQAQEHVIAERKRREKLSQNFIALSAIVPGLKKMDKASVLGDAIKYVKQLKERVQTLEEQAATKSAVLVKRSILFSDDDSDDSYGDQALPEIEVRVSGKDVLIKIQCDKHSGRAATILAQLEKHHLTVQSSTFLPFGNNIIDVTIVAQVNINIH. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02716 297 Coils Coil 183 210 - -
Seca9g02716 297 CDD bHLH_AtNAI1_like 146 215 - -
Seca9g02716 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 206 IPR036638 GO:0046983
Seca9g02716 297 Gene3D - 136 208 IPR036638 GO:0046983
Seca9g02716 297 SMART finulus 150 199 IPR011598 GO:0046983
Seca9g02716 297 PANTHER BHLH TRANSCRIPTION FACTOR 26 293 - -
Seca9g02716 297 Pfam Helix-loop-helix DNA-binding domain 147 194 IPR011598 GO:0046983
Seca9g02716 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02716 Seca-Chr9 40490578 40493305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02716 2 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.064 6.35e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g02716 HLH 5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02716 - - gmx:100791810 360.918