Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02704 ATGATGATTAGCAATGGTATGACTGCTACAATTGTATATGGCAGCCGTGACTTTGTGGATGGAACACCAACATTTTCAATACAACATTTGCTGACAGCTGGTCCTCAGAAGCACCAATCAGTGGCACTAATGAGAAGAGCAGATGAAGCAGTTTACTACAGGTTTGATTTCATTTTCGGCAATTCTGCATCTGTTATCCAAAATTGCAACACTTTGCCTAAGTTACCTAAGCATGGCCACCAGTCCACCAGAACACAATCACAGCACAGTAACGGACACATTTGTAATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAAAATAGGATGAAGTGGAAGGGTTTGAGAATCATTATTAGTAAACAAGCCACCAAGATTACAATCAAAGCTTTTCTTCAAGGAGACAGGCGCCCCCTTTAA 426 0.4108 MMISNGMTATIVYGSRDFVDGTPTFSIQHLLTAGPQKHQSVALMRRADEAVYYRFDFIFGNSASVIQNCNTLPKLPKHGHQSTRTQSQHSNGHICNAEFQNVGPGASTKNRMKWKGLRIIISKQATKITIKAFLQGDRRPL. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02704 141 SUPERFAMILY Pectin lyase-like 1 137 IPR011050 -
Seca9g02704 141 Gene3D - 78 140 IPR012334 -
Seca9g02704 141 PANTHER PECTINESTERASE 96 134 - -
Seca9g02704 141 Pfam Pectinesterase 94 137 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02704 Seca-Chr9 40406957 40407908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02704 1 138 Carbohydrate Esterase AT3G10710 27.686 3.36e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02704 - - gmx:100811152 119.783