Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02700 ATGGGTCTTGATCAGGATGCGAGCAATAGCTCAGGCCTTCACCTTGTTCTAGGGTTATCTTTGACTACTGCAAAGGAAACTACTTCTTCATCACCTCTATCCTCCACCAAGGCTGATGATAATAAGCCAACGCGAATGAAGCCTTATTCCTCCAACGAACCATCGCTAACGTTGGGTCTCTCCGCTGAGAGCTACCTCCCAAAAAATAAGATGAATGGGGGAATAAACAGCAAACAGGCTTATTATTGTGAGGTCGACCCTCTTCATGACTTATCTAGACAGACTTCACCTCACAGCGACGTCGTTTCGTCTTTCTCCACTGGGAGGATGGTCAAGAGAGAGAGGGATCTCAGCTGTGAAGAAGTTGAGGTGGAGGCAGATGAGAGGGTTTCTTCAAGAGTGAGTGATGAAGATGAAGACGGCACGAATGCCAGAAAGAAACTCAGGCTTACCAAAGAACAATCTGCACTGCTAGAAGAAAGCTTCAAACAACACAGCACTCTCAATCCTAAACAAAAACAAGCTTTAGCGAGGCAGTTGAATCTACGGCCTCGACAAGTTGAAGTGTGGTTTCAGAACCGGAGAGCCAGGTGCGTAATCTTTTCAATAAAATATCACCGCCTCCATACCAAACACCACCAAAATTATTTATATATATCTTTAGATTTTAATTTAAAGGATATCGGCCCTCAACAAATGTTTTAA 705 0.4383 MGLDQDASNSSGLHLVLGLSLTTAKETTSSSPLSSTKADDNKPTRMKPYSSNEPSLTLGLSAESYLPKNKMNGGINSKQAYYCEVDPLHDLSRQTSPHSDVVSSFSTGRMVKRERDLSCEEVEVEADERVSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARCVIFSIKYHRLHTKHHQNYLYISLDFNLKDIGPQQMF. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02700 234 ProSiteProfiles 'Homeobox' domain profile. 141 197 IPR001356 GO:0003677
Seca9g02700 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 18 197 - -
Seca9g02700 234 MobiDBLite consensus disorder prediction 23 39 - -
Seca9g02700 234 Gene3D - 151 197 - -
Seca9g02700 234 FunFam Homeobox-leucine zipper protein HAT22 149 195 - -
Seca9g02700 234 SMART HOX_1 143 205 IPR001356 GO:0003677
Seca9g02700 234 CDD homeodomain 145 198 IPR001356 GO:0003677
Seca9g02700 234 MobiDBLite consensus disorder prediction 23 56 - -
Seca9g02700 234 Pfam Homeodomain 145 197 IPR001356 GO:0003677
Seca9g02700 234 SUPERFAMILY Homeodomain-like 135 198 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02700 Seca-Chr9 40361629 40363362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02700 1 197 Homeobox Transcription Factor Family AT4G37790 50.739 1.21e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca9g02700 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02700 K09338 - gmx:100784129 263.848