Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02695 ATGGGAAGGGCTCCTTGCTGTGACAAAGCCAACGTCAAGAAAGGGCCATGGTCTCCTGAAGAAGATGCCAAACTCAAATCTTACATCGACCAGCATGGTACCGGTGGTAACTGGATTGCCCTGCCTCAGAAGATAGTAGGCCTTAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGCTGAATTATCTTCGCCCAAACATAAAACATGGGGGTTTCTCTGAAGAAGAAGATAACATCATCTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCTATTATAGCAGCACAGTTACCAGGGCGGACAGATAATGACATAAAGAACTACTGGAACACAAGACTGAAGAAGAAGCTTCTAGGGAAGCAAAGGAAGGAGCAAGTTCGCAGAGTAAGCAGCCTGCAGAAGCAAGAGATCAAAACAGAAACAGAGAATTTGAATATGGTGTCTTCTGCTGCTGGAATACAACCTCCCTATTGGCCTCCACAGTATTCCATCCTCCCAGTACTGAAACACTATGATGTTGACATTAATCAAACATCCTTCCTCAATAACAAACATCCTTCAGGCACTGGAATTAGATTCTCCCTGCAGCAGCAGGATCATCACCAGCCATACACCAACACAATCACTCCCACCATAAATTCACAAGATGCATGTGATATTCCCTCCACACAAGACCAGCCTAATTATAATCACATCATAAATCCAGTGGCCAATGGTGGCAGTACTTATCATCCGCCATCAAATACATTAATGTTTGAAGGCTTCACAAGTGATTTGAGTGAACTGGTCTGTGTCAACCCCCAACAAATGGCAGGATTTTATGGAATGGAATATTCTATAGACATGAGCAATGGTAGCACCATCACTAGTTCAACAGAAAGCTCTAGCTGGGGAGATATGAGCATGACCTCTTTGGTTTACTCTCCTTTGCTTAATTCTGACTATCAAGCAGCTGGTTGCCGACACGGAATTCCTCAAGCTTTCGATGAGGAGTCTAGGTATTTTGGAATGCAAATGCAATAA 1026 0.4376 MGRAPCCDKANVKKGPWSPEEDAKLKSYIDQHGTGGNWIALPQKIVGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQVRRVSSLQKQEIKTETENLNMVSSAAGIQPPYWPPQYSILPVLKHYDVDINQTSFLNNKHPSGTGIRFSLQQQDHHQPYTNTITPTINSQDACDIPSTQDQPNYNHIINPVANGGSTYHPPSNTLMFEGFTSDLSELVCVNPQQMAGFYGMEYSIDMSNGSTITSSTESSSWGDMSMTSLVYSPLLNSDYQAAGCRHGIPQAFDEESRYFGMQMQ. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02695 341 FunFam Transcription factor RAX3 7 69 - -
Seca9g02695 341 FunFam Transcription factor RAX3 71 144 - -
Seca9g02695 341 SMART sant 13 65 IPR001005 -
Seca9g02695 341 SMART sant 68 116 IPR001005 -
Seca9g02695 341 Gene3D - 71 146 - -
Seca9g02695 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Seca9g02695 341 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Seca9g02695 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 63 IPR017930 -
Seca9g02695 341 PANTHER OS09G0431300 PROTEIN 1 252 - -
Seca9g02695 341 Gene3D - 7 69 - -
Seca9g02695 341 ProSiteProfiles Myb-like domain profile. 9 63 IPR001005 -
Seca9g02695 341 Pfam Myb-like DNA-binding domain 14 63 IPR001005 -
Seca9g02695 341 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Seca9g02695 341 CDD SANT 16 63 IPR001005 -
Seca9g02695 341 SUPERFAMILY Homeodomain-like 11 110 IPR009057 -
Seca9g02695 341 CDD SANT 72 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02695 Seca-Chr9 40302520 40304234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02695 1 309 MYB Transcription Factor Family AT3G49690 50.309 7.20e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g02695 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02695 K09422 - gmx:100812816 378.252