Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02689 ATGAAGCCCATCCAAAATGTTAACAATCAAAATAACTGGTTGGGTTTCTCCCTCACTCCCCAAATCAATATAGGTGTTCCTTCACAATCACACCCTTCCTCTGCTGTTGCTGCTGAAACACTTCCACCAAGCTTTTACCACCCTACACTTGTTCATAACTATGGCTTTTACTATGGACTAGAAGGTGAAAATGTTGGACTGTATTCAGCCTTGCCTATCATGCCATTCAAATCTGATGGCTCTTTATATGGAATAGAATCTCTGAGTAGATCACAAGCACAAGCATTGGCAACTACTTCAACACCAAAACTGGAAACTTTCTTTCGTGGCCAGACGATGACAATCCCTCAATATGAATGCAATACCAACAAAGAAGCAATGCATCTGAGCTTAGAAAGTATGTTTTACAACCAAACCTTGTGCCATGACCCAAATAACCTAAATCATGTACATGAGAATATTAGCCAGCAACAGCTCTCATATAACTCTTCCTTAGGAAACCATGATTTGATGTTAGAAGGGTCCAAGCAAAATCAGTTTTCAGACAGTGTCCAGCTCCCAAACATGGCTGACGATCTGAAGAATTGGGTCTCAAGGGACTTTGCAGCTAGCCATGCACAGCAGTCAAAGATGATTGTCCCAATAGAGGATAATAGAGGCGAATCCGGGTCCATTGGATCAATGACATATGGGGATTTACAGTCATTGAGCTTGTCCATGAGTCCTACCTCACAACCAAGCTGTGTTACAAGTTCACAACAGACAACACCACCCACTCTCATTGATTCTGTTGTTGCCTTGGATACCAAGAAACGGGGTCCTGAAATGGTGGACTTGGAGCAAAATCAGAAGCAAATGGTTCTTAGGAAATCCATAGACACCTTTGGGCAGAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGTAAGAAAGAGGGTCAAGGCAGGAAAGGAAGGCAAGTTTATCTAGGTAAGCAAAAGAGGAAAATCAATCCATATACAAGTGATTCCAAAATTTTTATTGTAGGGGGTTATGATGTGGAAGAAAAGGCTGCAAGAGCATATGATATGGCCGCACTCAAGTATTGGGGACCCTCCACTCATATTAACTTCCCATTGGAGAATTATCAAAAAGAACTTGAGGAAATGAAGAATATGACCAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCTTCCATATACAGAGGAGTAACAAGGCACCATCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAATAAAGATCTATATCTTGGAACATTCAGTACCCAAGAGGAAGCAGGTGAGGCCTATGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCTGTTACTAATTTTGATATAACAAGATATGATGTGGAAAAAATTATGGCAAGTAACAACCTTCTTAGTAGTGAACTAGCCAGGCGTAACAAAGTGATGGATGGTGGAACTGGGAAAGAGGCAATAAACCATGAACCTTTAACATGTGATGACACTCTAATAATGCAGAAGAGGTGCAAAAGCCAATCAGAGTGGGAAATGGTTCTTTATCAAGAAGAAGCAGAGGAATTGAGTAAGATGGGAAGACAAGTACTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGCAGCTCAAGAGAAGAAAGTCCAGATAAGACAAGCTTGCCAGTGCTCTTTGATCAAATGCCTTCAACAGCTTCTAAATTATTGGCTACTATTTCATCAACTAGTAATGTTGGTACTTGGGAGCCATCTTCTCATCTTAGGCCTGCACTTTCTTTGCCTCAGATGCCAGTTTTTTCTGCTTGGACCGATGCATAA 1902 0.4148 MKPIQNVNNQNNWLGFSLTPQINIGVPSQSHPSSAVAAETLPPSFYHPTLVHNYGFYYGLEGENVGLYSALPIMPFKSDGSLYGIESLSRSQAQALATTSTPKLETFFRGQTMTIPQYECNTNKEAMHLSLESMFYNQTLCHDPNNLNHVHENISQQQLSYNSSLGNHDLMLEGSKQNQFSDSVQLPNMADDLKNWVSRDFAASHAQQSKMIVPIEDNRGESGSIGSMTYGDLQSLSLSMSPTSQPSCVTSSQQTTPPTLIDSVVALDTKKRGPEMVDLEQNQKQMVLRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGKQKRKINPYTSDSKIFIVGGYDVEEKAARAYDMAALKYWGPSTHINFPLENYQKELEEMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAGEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASNNLLSSELARRNKVMDGGTGKEAINHEPLTCDDTLIMQKRCKSQSEWEMVLYQEEAEELSKMGRQVLSNPSSLVTSLSSSREESPDKTSLPVLFDQMPSTASKLLATISSTSNVGTWEPSSHLRPALSLPQMPVFSAWTDA. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02689 633 CDD AP2 421 482 IPR001471 GO:0003700|GO:0006355
Seca9g02689 633 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 180 515 - -
Seca9g02689 633 SMART rav1_2 301 392 IPR001471 GO:0003700|GO:0006355
Seca9g02689 633 SMART rav1_2 422 486 IPR001471 GO:0003700|GO:0006355
Seca9g02689 633 Gene3D AP2/ERF domain 300 388 IPR036955 GO:0003700|GO:0006355
Seca9g02689 633 Gene3D AP2/ERF domain 422 482 IPR036955 GO:0003700|GO:0006355
Seca9g02689 633 SUPERFAMILY DNA-binding domain 300 388 IPR016177 GO:0003677
Seca9g02689 633 SUPERFAMILY DNA-binding domain 421 481 IPR016177 GO:0003677
Seca9g02689 633 CDD AP2 300 386 IPR001471 GO:0003700|GO:0006355
Seca9g02689 633 Pfam AP2 domain 422 472 IPR001471 GO:0003700|GO:0006355
Seca9g02689 633 PRINTS Ethylene responsive element binding protein signature 302 313 IPR001471 GO:0003700|GO:0006355
Seca9g02689 633 PRINTS Ethylene responsive element binding protein signature 368 388 IPR001471 GO:0003700|GO:0006355
Seca9g02689 633 ProSiteProfiles AP2/ERF domain profile. 301 386 IPR001471 GO:0003700|GO:0006355
Seca9g02689 633 ProSiteProfiles AP2/ERF domain profile. 422 480 IPR001471 GO:0003700|GO:0006355
Seca9g02689 633 FunFam AP2-like ethylene-responsive transcription factor 421 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02689 Seca-Chr9 40192795 40196546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02689 6 633 AP2-EREBP Transcription Factor Family AT4G37750 45.317 4.83e-162 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca9g02689 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02689 K09285 - gmx:100787611 781.941