LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g02689	ATGAAGCCCATCCAAAATGTTAACAATCAAAATAACTGGTTGGGTTTCTCCCTCACTCCCCAAATCAATATAGGTGTTCCTTCACAATCACACCCTTCCTCTGCTGTTGCTGCTGAAACACTTCCACCAAGCTTTTACCACCCTACACTTGTTCATAACTATGGCTTTTACTATGGACTAGAAGGTGAAAATGTTGGACTGTATTCAGCCTTGCCTATCATGCCATTCAAATCTGATGGCTCTTTATATGGAATAGAATCTCTGAGTAGATCACAAGCACAAGCATTGGCAACTACTTCAACACCAAAACTGGAAACTTTCTTTCGTGGCCAGACGATGACAATCCCTCAATATGAATGCAATACCAACAAAGAAGCAATGCATCTGAGCTTAGAAAGTATGTTTTACAACCAAACCTTGTGCCATGACCCAAATAACCTAAATCATGTACATGAGAATATTAGCCAGCAACAGCTCTCATATAACTCTTCCTTAGGAAACCATGATTTGATGTTAGAAGGGTCCAAGCAAAATCAGTTTTCAGACAGTGTCCAGCTCCCAAACATGGCTGACGATCTGAAGAATTGGGTCTCAAGGGACTTTGCAGCTAGCCATGCACAGCAGTCAAAGATGATTGTCCCAATAGAGGATAATAGAGGCGAATCCGGGTCCATTGGATCAATGACATATGGGGATTTACAGTCATTGAGCTTGTCCATGAGTCCTACCTCACAACCAAGCTGTGTTACAAGTTCACAACAGACAACACCACCCACTCTCATTGATTCTGTTGTTGCCTTGGATACCAAGAAACGGGGTCCTGAAATGGTGGACTTGGAGCAAAATCAGAAGCAAATGGTTCTTAGGAAATCCATAGACACCTTTGGGCAGAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGTAAGAAAGAGGGTCAAGGCAGGAAAGGAAGGCAAGTTTATCTAGGTAAGCAAAAGAGGAAAATCAATCCATATACAAGTGATTCCAAAATTTTTATTGTAGGGGGTTATGATGTGGAAGAAAAGGCTGCAAGAGCATATGATATGGCCGCACTCAAGTATTGGGGACCCTCCACTCATATTAACTTCCCATTGGAGAATTATCAAAAAGAACTTGAGGAAATGAAGAATATGACCAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCTTCCATATACAGAGGAGTAACAAGGCACCATCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAATAAAGATCTATATCTTGGAACATTCAGTACCCAAGAGGAAGCAGGTGAGGCCTATGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCTGTTACTAATTTTGATATAACAAGATATGATGTGGAAAAAATTATGGCAAGTAACAACCTTCTTAGTAGTGAACTAGCCAGGCGTAACAAAGTGATGGATGGTGGAACTGGGAAAGAGGCAATAAACCATGAACCTTTAACATGTGATGACACTCTAATAATGCAGAAGAGGTGCAAAAGCCAATCAGAGTGGGAAATGGTTCTTTATCAAGAAGAAGCAGAGGAATTGAGTAAGATGGGAAGACAAGTACTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGCAGCTCAAGAGAAGAAAGTCCAGATAAGACAAGCTTGCCAGTGCTCTTTGATCAAATGCCTTCAACAGCTTCTAAATTATTGGCTACTATTTCATCAACTAGTAATGTTGGTACTTGGGAGCCATCTTCTCATCTTAGGCCTGCACTTTCTTTGCCTCAGATGCCAGTTTTTTCTGCTTGGACCGATGCATAA	1902	0.4148	MKPIQNVNNQNNWLGFSLTPQINIGVPSQSHPSSAVAAETLPPSFYHPTLVHNYGFYYGLEGENVGLYSALPIMPFKSDGSLYGIESLSRSQAQALATTSTPKLETFFRGQTMTIPQYECNTNKEAMHLSLESMFYNQTLCHDPNNLNHVHENISQQQLSYNSSLGNHDLMLEGSKQNQFSDSVQLPNMADDLKNWVSRDFAASHAQQSKMIVPIEDNRGESGSIGSMTYGDLQSLSLSMSPTSQPSCVTSSQQTTPPTLIDSVVALDTKKRGPEMVDLEQNQKQMVLRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGKQKRKINPYTSDSKIFIVGGYDVEEKAARAYDMAALKYWGPSTHINFPLENYQKELEEMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAGEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASNNLLSSELARRNKVMDGGTGKEAINHEPLTCDDTLIMQKRCKSQSEWEMVLYQEEAEELSKMGRQVLSNPSSLVTSLSSSREESPDKTSLPVLFDQMPSTASKLLATISSTSNVGTWEPSSHLRPALSLPQMPVFSAWTDA.	634

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca9g02689	633	CDD	AP2	421	482	IPR001471	GO:0003700\|GO:0006355
Seca9g02689	633	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	180	515	-	-
Seca9g02689	633	SMART	rav1_2	301	392	IPR001471	GO:0003700\|GO:0006355
Seca9g02689	633	SMART	rav1_2	422	486	IPR001471	GO:0003700\|GO:0006355
Seca9g02689	633	Gene3D	AP2/ERF domain	300	388	IPR036955	GO:0003700\|GO:0006355
Seca9g02689	633	Gene3D	AP2/ERF domain	422	482	IPR036955	GO:0003700\|GO:0006355
Seca9g02689	633	SUPERFAMILY	DNA-binding domain	300	388	IPR016177	GO:0003677
Seca9g02689	633	SUPERFAMILY	DNA-binding domain	421	481	IPR016177	GO:0003677
Seca9g02689	633	CDD	AP2	300	386	IPR001471	GO:0003700\|GO:0006355
Seca9g02689	633	Pfam	AP2 domain	422	472	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g02689	Seca-Chr9	40192795	40196546	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g02689	6	633	AP2-EREBP Transcription Factor Family	AT4G37750	45.317	4.83e-162	474

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Seca9g02689		AP2	1.1e-08	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g02689	K09285		-	gmx:100787611	781.941

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