Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02680 ATGCTCATGTTTCAGCCTTCTAAAAGGGATATGGTTGTTGGTGTTGGGTTCGAGGGTGGTGGCGACGGCCAGATTCTAGATCTGGACACCGCCGTGAAAGACGGTGTTTTGGGTGGGGTTGGGGGTGGGATTATGGGAAGTGGGGTGTGTGAGAAGTTGGATCTGGGGAAGATGATTGAAGAGCTGGACTTGTATGAAGTGCCAAGTGTGTTCATATGTCCAATCTCGCTGGAACCAATGCAAGACCCTGTGACCCTTTGCTCGGGCCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAACTTGGGGCACTTGACATGCCCCACAACGATGCAAGAGCTCTGGGATGATTCAATCACTCCAAACACCACTCTTTACAGGCTCATATACACATGGTTCTCTCAGAAGTACCGGTTGATGAAGAAGAGGTCGGAAGATGTGCAGGGGAGGGCTTCTGAGCTTGTGGAGACATTGAAGAAGGTGAAGGGTCAGGCTCGAGTTCAGGCCCTTAAGGAGCTTCATCAAGTTGTGGCTGCTCATGCCACTGCTCGAAAGACAGTGATTGATGAAGGTGGAGTTTCTGTCATGTCTTCTTTGCTTGGTCCTTTTACTTCCCATGCTGTTGGCTCTGAAGTCATTGGTATCCTTGTGAGTTTGACTCTTGATTCAGAATCCAAAAAGAATCTTTTGCAGCCTACAAAATTTTCATTGATGGTGGACATCTTGAATGAGGGTTCAATTGAGACGAAAATCAATTGCACACGTCTGATTGAATCCTTAATTGATGAGAAGGATTTTCGTTCAGAGATTATCTCTAGCCATAGCCTTTTGGTTGGGTTAATGAGGCTTATTAAGGATAAGAGACACAGCAACGGAATCTGTCCTGGGTTAAGCCTCCTCAGAACAATATGTTTTCATAAAGAAGTTAGGAATTTGGTAGTGAGCATTGGGGCTGTTTCTCAATTGATTGAATTGTTGTCTGGAATGGAGCCTGATTGTTTAGAATTAGCCCTTTGTGTTTTGGATGCATTGGCATCTATTCCTGAAGGCAGAATGGCTTTAAAGAATTGTTCTAACACCATACCCATCCTGGTGAAACTGTTGATGAGGGTCTCAGAGAACTGCACCCAGTATGCATTGTCTATCCTATGGTCTGTGTGCAGGCTTGCACCTGAGGAGTGCTCATTGATTGCAGTCGATGCAGGGCTTGCTGCAAAACTCCTTCTTGTGATTCAAAGTGGTTGCAATCCTATATTGAAACAACAGTCTGCTGAGCTTCTGAAGCTGTGTAGTTTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACCAGAACCATCCAATGA 1356 0.4506 MLMFQPSKRDMVVGVGFEGGGDGQILDLDTAVKDGVLGGVGGGIMGSGVCEKLDLGKMIEELDLYEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFNLGHLTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYRLMKKRSEDVQGRASELVETLKKVKGQARVQALKELHQVVAAHATARKTVIDEGGVSVMSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLLQPTKFSLMVDILNEGSIETKINCTRLIESLIDEKDFRSEIISSHSLLVGLMRLIKDKRHSNGICPGLSLLRTICFHKEVRNLVVSIGAVSQLIELLSGMEPDCLELALCVLDALASIPEGRMALKNCSNTIPILVKLLMRVSENCTQYALSILWSVCRLAPEECSLIAVDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02680 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 137 IPR013083 -
Seca9g02680 451 SMART Ubox_2 70 133 IPR003613 GO:0004842|GO:0016567
Seca9g02680 451 SUPERFAMILY ARM repeat 155 436 IPR016024 -
Seca9g02680 451 CDD RING-Ubox_PUB 68 118 IPR045210 -
Seca9g02680 451 ProSiteProfiles U-box domain profile. 66 140 IPR003613 GO:0004842|GO:0016567
Seca9g02680 451 Pfam U-box domain 67 137 IPR003613 GO:0004842|GO:0016567
Seca9g02680 451 Gene3D - 138 445 IPR011989 -
Seca9g02680 451 PANTHER WDSAM1 PROTEIN 61 437 IPR045185 GO:0061630
Seca9g02680 451 SUPERFAMILY RING/U-box 61 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02680 Seca-Chr9 40085914 40087269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02680 1 451 U-box Gene Family AT3G49810 74.945 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02680 - - gmx:100779827 783.867