Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02674 ATGGCTTCGAGATTCTGGACCCAGGGTGCTAGTGAATCTGAGGAGGAAGAGAGTGATTATGATGAGGAGATTGAGACTGGAGTGGGTGAATCTGCTAATGAAGCCGTTACAAGCAGGTACCTGCGGGACAATGCAAGTGATAGTGATGATTCTGATGGCCAAAAGCGTGTTGTCAGGTCTGCAAAAGATAAGCGTTTTGAGGAGATGGCTTCCACTGTGGACCAAATGAAGAATGCCATGAAGATCAATGACTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAGAAAGTCATGCGTGTCACTGAATCTGAGAAGGTCCCCAATCTTTATATCAAGGCACTTGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGATGCCAAAAAGAAGATGAGTAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAATTGAAGAAGAACAATAAGCAATACGAGGAGTTGATTAACAAATGCAGGGAGAATCCGGAGAGTGAGGAGGAAAAAGAGGAAGAAGAGTCGGAGGAAGAATATGAAAGTGATGATGAGATTATCGATCCTGATCAGCTCAGGAAGCCTGAACTGAAATCAGATTCGGAAGCCTCTCATTATGAAGATGAAAAGGCAGATGCCGGTGAAGGACCTTGGGACCAAAAGCTTAGCAAGAAAGATAGACTTTTTGATAGACAGTTCATGAAAGACCCTAGTGAGATCACTTGGGACACTGTTAACAAGAAGTTCAAAGAGGTTGTGGCTGCTAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCTTAACAAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATCCTTTTTAGTGTGGTTTCTGCTCAGTTTGATGTTAACCCGGGCCTCAGTGGGCATATGCCCATAAATGTGTGGAAAAAATGCGTGCAGAATATGCTGGTCATTCTTGATATTCTAGTGCAGTACCCAAACATAATGGTTGATGATTCGGTGGAGCTGGATGAGAATGAAACTCAGAAAGGGCCTGACTATAATGGACCAATTCGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAAAATAGATGCTGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACACGTGAGTATGTTGAGAGACTTAGGGATGAACCAGTGTTTTTGATTCTTGCTCAGAATGTCCAGGAGTATCTTGAAAGGGTTGGAAATTTCAAAGCTTCTTCTAAGGTGGCCTTGAAGAGGGTTGAACTCATTTACTACAAGCCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCAGACAGAAGATGGAGATAATGGAGGGGAGGTGAGTGAGGAGTCTAAAGGGTTTGAGGAAACAAGAGTTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGGCCAGGAAACCCACATTCCCTGAGAATAGCCGGACCCTAATGGATTTATTAGTATCACTGATATACAAATATGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAATTCTCAATCGCCCGAGATCTGCTGCTTATGAGTCATTTGCAAGATAATGTTCAGCATATGGACATTTCCACACAGATACTTTTTAACAGGGCTATGTCGCAATTAGGTCTGTGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTTTATTCTGGTGGAAGGGTGAAAGAGCTGCTTGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGTCAGATGCCTTATCATATGCACATAAATCTTGAGCTTCTGGAGGCAGTGCATCTTATATCTGCCATGCTGCTGGAAGTTCCCAATATTGCAGCCAATGTTCATGATGCAAAACGCAAGGTCATTAGTAAGACTTTCCGTCGCCTGCTTGAGATCAGCGAGAAACAAACATTCACGGGTCCACCTGAAAATGTCAGAGATCACATTATGGCTGCCACAAGGGTTCTTAGTAAAGGAGACTTCCAAAAGGCTTTTGACATAATCGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGGGATGCAGTGCTCGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTGAGGACATACCTCTTTACCTTCTGTTCATCTTATGATTCTCTGAGTCTGGACCAACTCACAAAAATTTTTGACCTCTCTGTTCATCGCACTCACAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAACCAACTGGGTGCATTATTTTCCAAGATGTTGAGCACTCTAGGCTGCAGGGATTGGCATTCCAATTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCTTCAGAGGCAAGGATAGGTGGTGGTGGATTGGATTTGCCTCTAAGGAGAAGAGATGGCCAAGATTATGCTGCTGCTGCTGCAGGTGGTAGTGGAACAGCCTCAGGTGGTAGGTGGCAAGACTTGTCCCTTTCCCAGCCAAGGCAAGGCCGTGGACGTGCAGGATATGGTAGTGGTGGTGGAAGGCCATTGGCATTAGGTCAAGCAGCTAGGAGTGGCTATTCAAGGGATCGAATGGGACGAGGAACAGGTGCTGGCTATCAGAGTGCATATGGGAGGACTACTCAAGGTGGTGCAGCATTGAGGGGAACCCAGGGTGATGGATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCGTAA 2808 0.4473 MASRFWTQGASESEEEESDYDEEIETGVGESANEAVTSRYLRDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRENPESEEEKEEEESEEEYESDDEIIDPDQLRKPELKSDSEASHYEDEKADAGEGPWDQKLSKKDRLFDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQYPNIMVDDSVELDENETQKGPDYNGPIRVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPVFLILAQNVQEYLERVGNFKASSKVALKRVELIYYKPQEVYDAMRKLAEQTEDGDNGGEVSEESKGFEETRVPTAFVVTPELVARKPTFPENSRTLMDLLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNIAANVHDAKRKVISKTFRRLLEISEKQTFTGPPENVRDHIMAATRVLSKGDFQKAFDIIVSLDVWKFVRNRDAVLEMLKDKIKEEALRTYLFTFCSSYDSLSLDQLTKIFDLSVHRTHSIVSRMMINEELHASWDQPTGCIIFQDVEHSRLQGLAFQLTEKLSILAESNERASEARIGGGGLDLPLRRRDGQDYAAAAAGGSGTASGGRWQDLSLSQPRQGRGRAGYGSGGGRPLALGQAARSGYSRDRMGRGTGAGYQSAYGRTTQGGAALRGTQGDGSTRMVSLKGVRA. 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02674 935 MobiDBLite consensus disorder prediction 839 935 - -
Seca9g02674 935 Coils Coil 144 171 - -
Seca9g02674 935 MobiDBLite consensus disorder prediction 43 63 - -
Seca9g02674 935 Pfam PCI domain 660 788 IPR000717 -
Seca9g02674 935 MobiDBLite consensus disorder prediction 194 228 - -
Seca9g02674 935 MobiDBLite consensus disorder prediction 134 228 - -
Seca9g02674 935 MobiDBLite consensus disorder prediction 1 63 - -
Seca9g02674 935 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca9g02674 935 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 869 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca9g02674 935 MobiDBLite consensus disorder prediction 903 926 - -
Seca9g02674 935 MobiDBLite consensus disorder prediction 175 193 - -
Seca9g02674 935 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Seca9g02674 935 MobiDBLite consensus disorder prediction 135 154 - -
Seca9g02674 935 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 IPR000717 -
Seca9g02674 935 MobiDBLite consensus disorder prediction 155 174 - -
Seca9g02674 935 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 930 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca9g02674 935 MobiDBLite consensus disorder prediction 12 28 - -
Seca9g02674 935 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02674 Seca-Chr9 40019293 40024111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02674 1 935 Eukaryotic Initiation Factors Gene Family AT3G56150 68.797 0.0 1200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02674 K03252 - gmx:100779751 1575.84