Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02663 ATGGGGAAGAAGCAGCACAGCAAAGACAGGATGTTCATCACTAAAACCGAATGGGCAACGGAATGGGGAGGCGCCAAATCCAAAGAGAATCGCACCCCTTTCAAACGTCTTCCTTTCTATTGCTGCGCGCTTACATTTACGCCGTTTGAGTATCCAGTTTGCACAGCTGATGGAAGTGTATTCGATGTTATGAACATTACTCCCTATGTTATAAAGTATGGTAAACACCCTGTCACTGGAACTCCGCTGAAGCAGCAAGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAGGAGAATATCACTGTCCAGTACTAAACAAAGTTTTCACTGAATTTACACATATTGTGGCGGTGAAGACTACAGGAAATGTGTTCTGCTATGAGGCTGTTAAAGAGTTAAACATTAAGACAAAAAACTGGAAGGAGCTGCTCACCGACGAGCCATTTACTAAGGATGACCTTATAACAATTCAGAATCCTAATGCACTTGACAGCAAGGTTCTTTATGATTTTGATCATGTTAAACACAATTTGAAAGTTGATGATGAAGAACTACAGAAAATGAGTTCAGATCCAACCTATAACATAAATATGACGGGTGATATCAAGCAAATGCTTAAGGAGCTTGGAACTGAGAAAGGAAAGGAAACCGCAATGCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCCGCCATCTTAGCTGCAAGGTCACATGTTAAAGAGGATTCCAAATCAAATCCAAATGGAGAGGGCAATGCTCCTCAGGCTTTCAGTATTGTAGATGCTGCATCTGCCTCAGTACATGGAAGAAGTGCTGCTGCTGCTAAAGCCTCATCAGGTGATAAAACTGCTGCTAGAATAGCTATGCACAAAGCTGGTGAAAGGGCACCAGTGAATGCAAAGCTGGTAAAGAGCCGTTTCACTACTGGTGCTGCTTCCCGGTCTTTCACTTCAACATCATTTGATCCAGTTACAAAAAATGAATTTGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTACAACTGCATACCACACATGGTGATTTGAATATTGAGCTGCATTGTGATATAACGCCCAGGGCATGTGAGAACTTCATCACACTTTGTGAACGTGGATATTACAACGGAGTTGCTTTTCATAGAAACATAAGGAATTTTATGATACAAGGTGGTGATCCTACTGGCACTGGTAGAGGAGGTGAATCAATATGGGAAAAGCCTTTTAAAGATGAACTCAACTCCAAATTAATTCACTCTGGAAGGGGTGTGGTCAGCATGGCAAACAGTGGCCCCCACACTAATGGTTCCCAGTTTTTTATCTTGTACAAGTCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGCGTAGTTGTCGGTGGCTTGACTACACTAGCAGCAATGGAAAAGGTTCCTGTAGATGACAGTGACAAACCTCTGGTGAGTCCGTTTATTCTTTTCACTGTTGATGAAATAGATTAG 1515 0.4185 MGKKQHSKDRMFITKTEWATEWGGAKSKENRTPFKRLPFYCCALTFTPFEYPVCTADGSVFDVMNITPYVIKYGKHPVTGTPLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDSKVLYDFDHVKHNLKVDDEELQKMSSDPTYNINMTGDIKQMLKELGTEKGKETAMHGGGGGKAQKERAAALAAILAARSHVKEDSKSNPNGEGNAPQAFSIVDAASASVHGRSAAAAKASSGDKTAARIAMHKAGERAPVNAKLVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWEKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGVVVGGLTTLAAMEKVPVDDSDKPLVSPFILFTVDEID. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02663 504 CDD cyclophilin_RING 350 493 - -
Seca9g02663 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Seca9g02663 504 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Seca9g02663 504 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Seca9g02663 504 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Seca9g02663 504 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Seca9g02663 504 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Seca9g02663 504 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Seca9g02663 504 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Seca9g02663 504 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Seca9g02663 504 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 496 IPR002130 GO:0000413|GO:0003755
Seca9g02663 504 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Seca9g02663 504 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Seca9g02663 504 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 344 493 IPR044666 -
Seca9g02663 504 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 491 IPR002130 GO:0000413|GO:0003755
Seca9g02663 504 Gene3D - 331 502 IPR029000 -
Seca9g02663 504 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 331 499 - -
Seca9g02663 504 SUPERFAMILY RING/U-box 37 104 - -
Seca9g02663 504 SUPERFAMILY Cyclophilin-like 350 497 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02663 Seca-Chr9 39945198 39949322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02663 1 491 U-box Gene Family AT5G67530 80.244 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02663 K10598 - gmx:100819923 908.286