LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g02658	ATGGAGAGTTATCTAAATAAGAATTTTGGAGAAGTGAAGTCCAAAAACTCCTCTGAAGAAGCTCTTCAAAGATGGAGGAATCTGTGCGGCTTCGTAAAGAATCCAAAAAGACGTTTTCGTTTCACTGCCAATCTCTCCAAGAGAGAGGAAGCAGCTGCTATGCGTCGTACCAATCAGGAGAAACTGAGGGTCGCAGTTTTGGTTTCTAAAGCTGCATTTCAATTTATCCAAGGCGCCCAGCTAAGCGATTACAAAGTGCCAGAGGAAGTTAAAGATGCAGGATTTCAAATCTGTGGTGATGAATTAGGGTCTATTGTTGAAGGTCATGATGTAAAGAAGTTCAGATATCACGGTGGGGTTAATGGTGTTGCAGAAAAGCTTTCTACATCAATCACTAAAGGGCTTAGCAATGATCCTGATTCACTGAATAGGAGACAAAGGATATATGGAATCAATAAATTTACTGAAAGTGCAGCTCGGAGTTTCTGGGTTTTTGTTTGGGAAGCTCTCCAAGACATGACTCTCATGATACTTGGAGCGTGTGCTTTTGTGTCTCTGATAGTTGGCATTGCAACGGAAGGATGGCCCAAGGGGGCTCATGATGGTCTTGGAATTGTTGCTAGTATCTTACTGGTTGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCCTTACAATTCAAGGATTTAGACAAGGAGAAGAAGAAGATATCCATTCAGGTCACAAGGAATGGATATAGGCAGAAAATGTCAATATATGAATTACTTCCCGGTGATATTGTGCATCTTGCCATTGGTGACCAAGTCCCTGCTGATGGACTATTTGTTTCAGGATTTTCTGTGCTGATTGATGAATCAAGTTTAACAGGAGAGAGTGAGCCAGTGGTGGTAAATTCTGAAAATCCTTTTCTTCTTTCTGGAACCAAGGTCCAAGATGGATCATGCAAGATGTTGATTACCACTGTTGGGATGAGGACTCAATGGGGTAAGTTGATGGCTACTCTCAGTGAAGGTGGAGATGATGAAACACCATTACAGGTGAAATTGAACGGAGTGGCAACCATTATTGGGAAGATTGGCCTATTTTTTGCCGTGGTTACTTTTTCAGTTCTGGTGCAAGGACTCGTGAGCCATAAACTCCAACAAGACAGCTTCTGGAGCTGGACTGGGGATGATGCATTGGAGATGTTGGAGTTCTTTGCAGTTGCAGTTACCATTGTTGTTGTTGCTGTTCCAGAAGGGCTGCCATTAGCTGTGACATTGAGTCTTGCATTTGCTATGAAGAAGATGATGAATGACAAGGCACTTGTTCGACATTTGGCAGCTTGTGAGACCATGGGATCAGCCACTACTATATGTAGTGACAAGACTGGGACACTAACAACCAATCACATGACTGTTGTGAAAACATGCATTTGCATGAACAGCAAAGAGGTGAGCAATAAGACTTCTAGTTTGTGCTCTGAACTCCCAGAATCTGCTGTGAAACTGCTGCTAGAGTCAATATTTAACAATACAGGAGGAGAGGTCGTGGTTGACAAAGATGGAAAACGTGAGATTCTAGGGACACCAACTGAGACTGCAATCTTGGAATTTGGGTTGTCATTAGGTGGCGATTTTCAGGAAGAAAGGCAAGCATGTAAACTTGTTAAAGTTGAGCCATTCAACTCTACTAAGAAAAGGATGAGTGTAGTGGTAGAGCTCCCTGGTGGGGGTTTACGAGCACATTGTAAAGGTGCTTCTGAAATAATTCTGGCTGCTTGTGACAAAGTGCTCAACTCAAACGGTGAGGTTGTCCCCCTTGATGAAGAATCAGCTAACCATCTTAAGGCTACAATAAACCAGTTTGCTAGTGAGGCTCTTAGAACTTTATGCATTGCCTATATGGAATTGGAAAATGGGTTCTCTGCTGAAGACCCCATTCCTGCTTCTGGATATACTTGTATAGGAGTTGTTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTAGCAGTATGTCGTTCAGCTGGAATAACAGTAAGAATGGTTACAGGTGACAATATTAATACTGCAAAGGCTATAGCCAGGGAATGTGGTATTTTAACAGATGATGGTATAGCCATTGAAGGTCCAGATTTTAGAGAGAAGAGTCAGGAAGAGTTGCTTGAACTGATCCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACCTCCGTACCACATTTGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCTGCGCTTCATGAAGCCGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCAAAGGAAAGTGCAGATGTCATAATTTTGGATGATAACTTCTCCACAATAGTAACAGTGGCCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAATTCGTACAGTTCCAGCTGACAGTTAATGTGGTTGCATTAATAGTGAACTTCACATCAGCTTGCTTGACAGCAGCCTGCATGACAGGATATAAAAAACCTTCCTTTTTCCTTCTATTTTTTTTATCTTATGATATTATGTGCATTTTCTCTCCAGGAACTGCACCTCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACATTGGGAGCACTTGCGCTTGCAACAGAGCCTCCAAATGATGATTTAATGAAGCGTTCACCTGTTGGAAGGAAAGGGAATTTCATCAGCAATGTCATGTGGAGGAATATCTTGGGTCAATCACTGTATCAGTTTATGGTGATATGGTTTCTTCAGTCAAAAGGAAAATCGATCTTTTCAATTGATGGCCCTGATTCGGATCTGGTCTTAAACACACTTATTTTCAACTCATTTGTATTCTGTCAGGTTTTCAATGAGATAAACTCACGTGAGATGGAGAAAATTGATGTTTTTAAAGGCATATTGGATAATTATGTCTTCGTGGGTGTCATCAGTGCTACTGTTTTCTTTCAAATCATTATAGTTGAGTACTTGGGAACCTTCGCAAACACAACACCTCTCACTCTGGCTCAGTGGTTCTTTTCCTTATTAGTTGGATTTATAGGCATGCCTATTGCTGCTCAATTAAAGAAGATCCCTGTCTGA	3129	0.4174	MESYLNKNFGEVKSKNSSEEALQRWRNLCGFVKNPKRRFRFTANLSKREEAAAMRRTNQEKLRVAVLVSKAAFQFIQGAQLSDYKVPEEVKDAGFQICGDELGSIVEGHDVKKFRYHGGVNGVAEKLSTSITKGLSNDPDSLNRRQRIYGINKFTESAARSFWVFVWEALQDMTLMILGACAFVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVVVNSENPFLLSGTKVQDGSCKMLITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLVSHKLQQDSFWSWTGDDALEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMNSKEVSNKTSSLCSELPESAVKLLLESIFNNTGGEVVVDKDGKREILGTPTETAILEFGLSLGGDFQEERQACKLVKVEPFNSTKKRMSVVVELPGGGLRAHCKGASEIILAACDKVLNSNGEVVPLDEESANHLKATINQFASEALRTLCIAYMELENGFSAEDPIPASGYTCIGVVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKSQEELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTAACMTGYKKPSFFLLFFLSYDIMCIFSPGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSKGKSIFSIDGPDSDLVLNTLIFNSFVFCQVFNEINSREMEKIDVFKGILDNYVFVGVISATVFFQIIIVEYLGTFANTTPLTLAQWFFSLLVGFIGMPIAAQLKKIPV.	1043

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g02658	1042	PRINTS	H+-transporting ATPase (proton pump) signature	785	810	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Seca9g02658	1042	PRINTS	H+-transporting ATPase (proton pump) signature	753	769	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Seca9g02658	1042	PRINTS	H+-transporting ATPase (proton pump) signature	609	627	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Seca9g02658	1042	FunFam	Calcium-transporting ATPase	216	336	-	-
	Seca9g02658	1042	PRINTS	P-type cation-transporting ATPase superfamily signature	453	467	-	-
	Seca9g02658	1042	PRINTS	P-type cation-transporting ATPase superfamily signature	284	298	-	-
	Seca9g02658	1042	PRINTS	P-type cation-transporting ATPase superfamily signature	777	789	-	-
	Seca9g02658	1042	PRINTS	P-type cation-transporting ATPase superfamily signature	650	661	-	-
	Seca9g02658	1042	PRINTS	P-type cation-transporting ATPase superfamily signature	753	772	-	-
	Seca9g02658	1042	PRINTS	P-type cation-transporting ATPase superfamily signature	672	682	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g02658	Seca-Chr9	39874029	39884208	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g02658	1	1042	Primary Pumps ATPases	AT4G37640	81.112	0.0	1736

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g02658	K01537		-	gmx:100792691	1830.07

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