LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g02654	ATGAAAGTTCGTTACTTGGGCTTCTACATCATCATCATCATCTCACTGTCTTTGTCCATCCCAGTCAAAGGTGTCAACACCACAATTCAATTCCGCACTACAAATGAATCTATCCCAAGAAGAATTCTTCACCAGCCACTCTTTCCGGCGAGTTCTGCTCCACCGCCAGCAGTCACAGAGTCACCACCGCCACCGCCACCTCCGACGGAGACTCCACCTTCTTCCGATGGCAACATTCCTTTCTTTCACGAGTATCCAGCGGGGCCACCCCCAGATCAGAACCAGGCAGCACCGTCAACTTTGGCGTCCAACAGCACAACCGCGAACCCAACGGCGACACAGCCAACAAAGGGGACAAAGAAGGTAGCCATTGTGATCTCCGTCGGAATTGTGACGCTCGGAATGCTTTCAGCACTCGCCTTCTTCTTATACAAACACAGAGCAAAACACCCCATGGAGACCCAAAAGCTTGTGGGTGGGAATCCCCAGAGGAACAACCCAGAGGATTCAACAGCACCACCGTCAAGCTTCCTCTACATTGGTACCGTGGAACCAACGCGAACGTCTGCGACAGTGAATGAACCGAGAGAATCCAATAAGGCAAATAGGTCACCTTATCATAAACTCAATTCTATGAAGCGATCATCCGATCGGTACCGTCCCAGCCCTGAGTTGCAGCCATTGCCGCCGCTGACTAAGCCTCTCGACGGAAATTACCCGCCGGCGGTGTCGTCCTCGTCGTCTTCATCTTCAGACGAGGAAAGCCAGGAGATGGCGTTTCATTCGCCGCAGAACTCGTCATTGAGTCTCGAAGAAGCGTATTACACGCCGGTTTCGCGTCAGAGTTCTCTGGTTAACGGTAGCCCCACCGTGCCACGTTCTAAGAGAGAGACTCCCTCGACCCCTCCTTCCCTTCCATTCTCCAAAAGAACTTCCCCAAAGTCTCGCATTTCGGCTGCATCGCCGGATATAAGACACGTCATCATACCATCTATAAAGCAGGCTCCGCCGGCGCCGCCGCATGAGCAGCCGGATAAACAAAAGAGCTCCGGAGCTTCCAGAAGGCCAAAATTCTCAGCGCCACCTCCAGCTCCGAATTTGACGCATCTTCAGTCAACAACTGAAATGGCTTTGAACGTGTCTAGGACTTCACTCAATCCTCCTCCTCCTCCGCCGCCACCACCACCACCGCCTCCTCCTCCTCCACCGCGGAAAGAAGGGTCTCCTTCGGTTGGTGTTTCGTCTTCTTCTGCATCTATAAAGCAGCAGTCTTGGTCTCCGAGTCAAAGAGGTGCTGCTTCTGCTGGCAGTGTAACAAAAGGTTCAGTTTCAGAGCATGGTGATAAAAGTGTGAGCTCTTCCGAGAGGCTTGAAGCCAATGAGACGGATGGAGCCAAACCCAAGTTAAAGGCTCTGCATTGGGATAAAGTCCGTGCAACCTCAGACCGTGCTACAGTGTGGGACCAGCTAAAATCAAGCTCGTTTCAATTAAATGAGGACATGATGGAGTCTCTGTTTGGCTGCAAAGCCACGAAATCTGCCCCAAAAGAACCTCCTAAAAAATCAGTTTTCCCCTCAGTTGATCAGGAGAACAGGGTGTTAGACCCAAAGAAGTCCCAGAATATAGCTATACTACTGAGGGCACTGAATGTGACAAGAGATGAGGTGTCCGAGGCTCTTTTGGATGGGAATCCTGAAGGTTTGGGTGCTGAGCTATTGGAAACCCTTGTAAAGATGGCTCCTACTAAAGAGGAAGAGATCAAACTTAAAAACTATGATGGTGATCTCTCAAAACTTGGATCTGCAGAAAGATTTCTTAAAACAGTGCTTGATATCCCTTTTGCCTTTAAAAGAGTTGAAGCTATGCTATACAGAGCCAACTTTGATTCAGAAGTTAACTACCTCAGGAAGTCTTTTCAAACCCTGGAGGCGGCAAGTGAAGAATTGAGGAACAGTAGGTTATTCTTCAAACTCCTTGAAGCTGTTCTCAGGACAGGTAACAGAATGAATGATGGCACTAATCGAGGTGATGCTAAAGCTTTCAAACTGGACACACTCCTAAAACTTGTAGATATAAAGGGAACAGATGGAAAGACCACATTGCTCCACTTTGTGGTCCAAGAGATCATCAGATCTGAAGGTGCAGGAGCCGAATCTGCAAATGAGACTGCTCAGAATCAAATGGATTCCAAATTTAATGAGGATGAGTTTAGGAAGAAAGGATTGCAGGTTGTGGCAGGGCTCAGTAGAGACCTTATTAATGTCAAAAAAGCAGCAGGAATGGATTCGGATGTCTTAAGCAGCTATGTTTCAAAGCTTGAAACGGGGCTTGATAAAGTGCGGTTGGTTTTGGAATATGAGAGGCCAGATATGCCAGGCAATTTCTTTAACTCCACAAAGCTGTTTCTGAAATATGCTGAAGATGAAATTGTGAGGATTAAGGCTGATGAGAAAAAGGCCTTATTCCTTGTGAAAGAAGTTACTGAATACTTTCATGGGAACGCAGCAAAGGAAGAAGCCCACCCTTTCAGGATTTTTATGATTGTAAGAGACTTTCTAAATATTTTGGATCTAGTGTGCAAAGAAGTGGGAAGGATGCATGATAGAATTGTTGGAGGTTCTTCTAGATCCTTCCGAATAGCTGCCAATGCATCATTGCCTGTTCTCAACAGGTACAATGCAAGACAAGATAGGAGCTCGGATGAGGACAGCTCATCCCCATAG	2724	0.4769	MKVRYLGFYIIIIISLSLSIPVKGVNTTIQFRTTNESIPRRILHQPLFPASSAPPPAVTESPPPPPPPTETPPSSDGNIPFFHEYPAGPPPDQNQAAPSTLASNSTTANPTATQPTKGTKKVAIVISVGIVTLGMLSALAFFLYKHRAKHPMETQKLVGGNPQRNNPEDSTAPPSSFLYIGTVEPTRTSATVNEPRESNKANRSPYHKLNSMKRSSDRYRPSPELQPLPPLTKPLDGNYPPAVSSSSSSSSDEESQEMAFHSPQNSSLSLEEAYYTPVSRQSSLVNGSPTVPRSKRETPSTPPSLPFSKRTSPKSRISAASPDIRHVIIPSIKQAPPAPPHEQPDKQKSSGASRRPKFSAPPPAPNLTHLQSTTEMALNVSRTSLNPPPPPPPPPPPPPPPPPRKEGSPSVGVSSSSASIKQQSWSPSQRGAASAGSVTKGSVSEHGDKSVSSSERLEANETDGAKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCKATKSAPKEPPKKSVFPSVDQENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPEGLGAELLETLVKMAPTKEEEIKLKNYDGDLSKLGSAERFLKTVLDIPFAFKRVEAMLYRANFDSEVNYLRKSFQTLEAASEELRNSRLFFKLLEAVLRTGNRMNDGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAGAESANETAQNQMDSKFNEDEFRKKGLQVVAGLSRDLINVKKAAGMDSDVLSSYVSKLETGLDKVRLVLEYERPDMPGNFFNSTKLFLKYAEDEIVRIKADEKKALFLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLNILDLVCKEVGRMHDRIVGGSSRSFRIAANASLPVLNRYNARQDRSSDEDSSSP.	908

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g02654	907	MobiDBLite	consensus disorder prediction	94	118	-	-
	Seca9g02654	907	MobiDBLite	consensus disorder prediction	158	209	-	-
	Seca9g02654	907	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	459	882	IPR015425	-
	Seca9g02654	907	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	392	866	-	-
	Seca9g02654	907	Gene3D	Formin, FH2 domain	453	867	IPR042201	-
	Seca9g02654	907	MobiDBLite	consensus disorder prediction	409	448	-	-
	Seca9g02654	907	MobiDBLite	consensus disorder prediction	239	318	-	-
	Seca9g02654	907	MobiDBLite	consensus disorder prediction	449	465	-	-
	Seca9g02654	907	MobiDBLite	consensus disorder prediction	49	118	-	-
	Seca9g02654	907	MobiDBLite	consensus disorder prediction	156	465	-	-
	Seca9g02654	907	SMART	it6_source	459	871	IPR015425	-
	Seca9g02654	907	Pfam	Formin Homology 2 Domain	462	856	IPR015425	-
	Seca9g02654	907	MobiDBLite	consensus disorder prediction	49	74	-	-
	Seca9g02654	907	MobiDBLite	consensus disorder prediction	384	407	-	-
	Seca9g02654	907	PANTHER	FORMIN-RELATED	18	901	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Seca9g02654	907	MobiDBLite	consensus disorder prediction	365	383	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g02654	Seca-Chr9	39818987	39824118	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g02654	40	897	FH2 protein (formin) Gene Family	AT5G67470	58.969	0.0	856

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g02654	-		-	gmx:100798670	1201.42