Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02647 ATGGCCATAAGGCCCTTCCATTTCCAATCGCGCCACCATACATTGGTCTCTCTTTTCAGCACTTGTCATTCCTTTTCCGCTAGCAAGCTTCTGCTATTCCCCGAAACCTTTCCCACTCCCTCCATTTTCTTCCTCCGTCGCTTCGCTGCATCGGCGACAACTCCGTTTTCACGCCCTCACCGCTCTCATCATCCGCTCCCGCCGTCCGACACCCTGGCGCAGAAGATTGGAAAATCCACTCGCCACCCCGGCGCTACCTCTAAGGCCAGAGTTTACACCGATATCAATGTTGTCCGTCCCAAGGAATATTGGGACTACGAGTCCCTCACCGTCCAGTGGGGGGAGCAAGATGATTATGAGGTTGTGAGGAAGGTGGGAAGGGGGAAATACAGTGAAGCGTTTGAGGGTGTTCACTGCACGGATAATGAAAAATGTATCATCAAGATCCTGAAACCCGTCAAGAAGAAGAAGATAAAGCGGGAGATCAAAATATTGCAAAATCTTTGTGGAGGACCCAATATTGTAAAGTTGCTTGACATCGTTAGAGATCAACAATCAAAGACCCCAAGCCTTATATTTGAATATGTTAATAACACAGATTTTAAAGTGCTCTATCCTACCCTGTCAGATTATGATGTACGATATTATATCTACGAACTTCTAAAGGCACTGGATTATTGTCATTCACAAGGAATCATGCATCGGGACGTAAAGCCTCATAATGTAATGATTGACCATGAGCAACGTAAGCTTCGCCTTATAGATTGGGGCCTTGCAGAGTTTTATCATCCTGGGAAAGAATATAATGTCCGCGTTGCATCGAGAGTCATAAATTCCTTCTTAAGGAATCCTTCTGGAAATCCAATCAGTGATATGCTGTGTATTTGTAGCGTGCTGTTAGTGGTTGCTGCTATGTTCCTTCAGGTTGCTGGTTTTTTTTTTGTAGCTTCTTATGATGATTCATTGATTCTCTATTTATCCTTTTTAATTTCTCTTTTCTTTCTAATAATATATGTGTAG 1020 0.4363 MAIRPFHFQSRHHTLVSLFSTCHSFSASKLLLFPETFPTPSIFFLRRFAASATTPFSRPHRSHHPLPPSDTLAQKIGKSTRHPGATSKARVYTDINVVRPKEYWDYESLTVQWGEQDDYEVVRKVGRGKYSEAFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDVRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRVINSFLRNPSGNPISDMLCICSVLLVVAAMFLQVAGFFFVASYDDSLILYLSFLISLFFLIIYV. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02647 339 SMART serkin_6 119 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02647 339 Gene3D Phosphorylase Kinase; domain 1 105 195 - -
Seca9g02647 339 ProSiteProfiles Protein kinase domain profile. 119 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02647 339 SUPERFAMILY Protein kinase-like (PK-like) 90 274 IPR011009 -
Seca9g02647 339 Gene3D Transferase(Phosphotransferase) domain 1 204 283 - -
Seca9g02647 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Seca9g02647 339 PANTHER CASEIN KINASE II SUBUNIT ALPHA 82 277 IPR045216 GO:0004674|GO:0006468
Seca9g02647 339 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Seca9g02647 339 Pfam Protein kinase domain 119 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02647 339 FunFam Casein kinase II subunit alpha 105 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02647 Seca-Chr9 39721091 39725236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02647 119 259 CBL-interacting serine-threonine protein kinases AT5G25110 35.333 6.96e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Seca9g02647 Pkinase 8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02647 K03097 - zju:107409035 418.698