Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02643 ATGACGCAATTCACACACTTTTCCAACCCTAACATGAACAAAAATCAAATTCCTAGGACTAGGCCCTGGGCTGGATTCCCTACACCTAAGTCATCCCTAGATAGCTTCGGCGACGCCAATTGCATGGAACAGTTACTTGTTCACTGTGCCAACGCCATCGAAAGCAACGATGTAACTCTGGCCCAACAAATCCTTTGGGTCCTCAATAACATAACACCCCCAGACGGTGACTCCAATCAGCGCCTAGCAGGTAGCTTCCTTCGAGCCCTCACCGCTCGTGCTGCCAAAACAGGTAGTTACAAAATGCTTGAAGCCGTTACAGACGCTCAAACTAACCATAACAACCTCTCCATTAATAACAACCTCTCCATACACACTCACAAATTCTCTGTCATCGAGTTAGCCAACTTCGTTGACTTGACCCCTTGGCACCGTTTCGGTTTCACAGCTGCTAATTCCGCCATTCTAGAAGCTTCTGAAGGATTCTCCGTTATTCACATTGTGGACTTGAGCTTAACGCATTGCATGCAGATTCCCACTCTCATTGACGCACTCGCCACGCGCTACGAGGTTCCTCCATTAATCAAGCTTACCGTTGCTGCTGATTCTAATTCTAATATTCCACCTATGCTTGACCTTTCCTACGACGAATTGGGCGCCAAATTGGTCAACTTCGCTAGGTCAAAGAACGTTATTATGGAATTCAGAGCGGTTTCTTCCACTTACGCAGATGGTTTCGCTGCTTTGATTGAACATCTTCGGGTGCAACATATGGTTTATGCAGCAGAAGGTCATCATACAAATGAAGCTTTGGTTATAAACTGTCACATGATGCTTCATTACATTCCGGATGAATCTCTATCTACAATTCATGATGCAGATTCCAATTCTTATGCTTATGACTCTTCTTCTTCTTCTTCTGTTAATGCTTCGTCGTTGCGATCGATGTTCCTCAAGGCACTGCGGAGTTTAGACCCGACGATTGTCGTTTTGGTGGATGAAGATGCAGATTTAACATCTGATAATTTGGTTTGTAGATTAAGGTCTGCGTTTAATTATTTATGGATACCATACGACACGGTGGACACGTTTCTTCCACGAGGAAGTAAACAAAGGCAGTGGTATGAAGCGGATATTTGCTGGAAGATAGAGAATGTGATAGCACATGAAGGGATTCAGAGGGTTGAGAGGGTTGAGCCTAAAAGCAAGTGGGAGCAACGCATGAGGAATGCAAACTTTCATGGGATTAGTTTCAGTGAGGATTCGGTTACGGAGGTGAAGGCAATGCTTGATGAACATGCAGCTGGATGGGGATTGAAGAAGGAAGATGAGCAACTTGTGCTTACATGGAAAGGCCACAATGTTATTTTTGCCTCTGTTTGGTTGCCTGCTTGA 1395 0.4473 MTQFTHFSNPNMNKNQIPRTRPWAGFPTPKSSLDSFGDANCMEQLLVHCANAIESNDVTLAQQILWVLNNITPPDGDSNQRLAGSFLRALTARAAKTGSYKMLEAVTDAQTNHNNLSINNNLSIHTHKFSVIELANFVDLTPWHRFGFTAANSAILEASEGFSVIHIVDLSLTHCMQIPTLIDALATRYEVPPLIKLTVAADSNSNIPPMLDLSYDELGAKLVNFARSKNVIMEFRAVSSTYADGFAALIEHLRVQHMVYAAEGHHTNEALVINCHMMLHYIPDESLSTIHDADSNSYAYDSSSSSSVNASSLRSMFLKALRSLDPTIVVLVDEDADLTSDNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGIQRVERVEPKSKWEQRMRNANFHGISFSEDSVTEVKAMLDEHAAGWGLKKEDEQLVLTWKGHNVIFASVWLPA. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02643 464 ProSiteProfiles GRAS family profile. 33 462 IPR005202 -
Seca9g02643 464 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 41 451 IPR005202 -
Seca9g02643 464 MobiDBLite consensus disorder prediction 1 18 - -
Seca9g02643 464 Pfam GRAS domain family 42 461 IPR005202 -
Seca9g02643 464 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02643 Seca-Chr9 39642895 39645040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02643 26 463 GRAS Transcription Factor Family AT3G49950 57.596 6.87e-178 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca9g02643 GRAS 1e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02643 - - adu:107487668 705.286