Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02637 ATGTCGAAGGCGCGTGTTTACACCGATGTCAATGTTCTTCGCCCCAAAGAGTATTGGGATTACGAGTCTCTCACCGTTCAATGGGGTGATCAGGATGATTATGAGGTGGTGCGAAAAGTGGGAAGGGGGAAATATAGTGAGGTTTTTGAAGGCATAAATGTCAATAGCAATGAACGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAGAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGACCAACATTCAAAAACTCCTAGCTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCTTGGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAGTTACGAAAACTTCGCTTGATAGATTGGGGTCTTGCGGAATTTTATCATCCTGGAAAGGAGTATAATGTTCGTGTAGCTTCAAGATACTTTAAGGGGCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGGTGAGAAATATAGCTATATTTCGCAAGGAACCTTTCTTTTATGGCCATGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTTAATGCGTATCTTAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGGCACAGTCGCAAGCCTTGGTCTAAATTTATCAACCCGGATAATCAGCATCTTGTGTCTCCCGAGGCAATTGATTTTCTTGATAAACTCCTTCGATATGATCACCAAGACAGGCTAACAGCAAGAGAAGCTATGGCACATCCGTATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACACAGTAA 1017 0.4041 MSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMVRNIAIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINPDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02637 338 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Seca9g02637 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Seca9g02637 338 ProSiteProfiles Protein kinase domain profile. 34 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02637 338 CDD STKc_CK2_alpha 15 324 IPR045216 GO:0004674|GO:0006468
Seca9g02637 338 FunFam Casein kinase II subunit alpha 111 327 - -
Seca9g02637 338 Gene3D Transferase(Phosphotransferase) domain 1 111 324 - -
Seca9g02637 338 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Seca9g02637 338 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 334 IPR045216 GO:0004674|GO:0006468
Seca9g02637 338 SMART serkin_6 34 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02637 338 FunFam Casein kinase II subunit alpha 20 110 - -
Seca9g02637 338 Pfam Protein kinase domain 34 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02637 338 SUPERFAMILY Protein kinase-like (PK-like) 27 328 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02637 Seca-Chr9 39576082 39581874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02637 32 324 Core Cell Cycle Gene Families AT1G76540 30.255 9.21e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Seca9g02637 Pkinase 2.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02637 K03097 - gmx:100819679 658.677