Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02628 ATGTGCTTTTGTGGTGGAAGCAACAATGATGAGCTCTTGTGGCACGTGGACTTGAAACCCCATGCTTCAGGGGACTATTCAATTGCAGTGGTACAAGCTAATTCCTCCTTGGAAGACCAAGGACAAGTCTTTACCTCTCCAGCCGCAACTTTTGTTGGCGTTTACGACGGTCATGGTGGACCTGAAGCTTCCCGTTTCATCACCAACCATCTCTTCTCCTTCCTTCGCAGTAAGACGCCTCTAAATTCTGAAACAACTATAGAGTTCGCTTCAGAGGAAGGTGGTTTGTCAGAGCATGTGATAAAGAAGGCCTTCTATGCAACTGAAGAGGAGTTCTTAAATTTAGTGAGGCAATCTTGGACTGCACAGCCACATATTGCTTCAGTGGGTTCTTGTTGTCTTTTGGGAGCGATTTCAAATGATGATCTTTATGTTGCTAATCTCGGGGATTCGAGAGCGGTTCTGGGTCGGAAAGCATTGGAAGGACAGGTAAATTGTGCTCCTGTGGTGGCAGAGCGTTTGTCTACAGATCATAATGTTGGAGTGGAGGAGGTCAGAAAGGAGGTTGAGGCTCTTCACCCTGATGATGAAGACATTGTGGTTCACACTCATGGAGTTTGGCGAATCAAGGGCATTATTCGGGTCTCAAGATCAATTGGAGATGTTTATCTAAAGAAACCAGATTTTGACAATAATCCCTTGTTCCGGCAATTTGTATGTCCGGTACCTTTAAAGAGACCCGTAATGACAGCAGAACCATCGATATTGACGCGGAAGTTGAGAGCAGAAGATATGTTTTTGATCTTTGCATCAGACGGACTTTGGGAACATTTAACCGATGAAGCGGCTGTTGAAATCATCTTCAGAAGTCCAAGAATAGGAATAGCAAAACGATTGATAAGAGCTGCATTGGAAGAGGCTGCAAAGAAAAGAGAAATGAGATATGAGGATTTAAAAGGAATTGAGAAAGGTATAAGGCGCTATTTTCATGACGATATTACGGTGATCGTTCTATACCTCGATCATTCATCACAAGGTTCTCTGAATGGTAGGTCAAGACATCAAGGAGTCTGTGATTGCATTGCTACTCCTGTTGATATCTTTTCTCTCAAAGCAGATGAATCTAACCTGTAA 1134 0.4339 MCFCGGSNNDELLWHVDLKPHASGDYSIAVVQANSSLEDQGQVFTSPAATFVGVYDGHGGPEASRFITNHLFSFLRSKTPLNSETTIEFASEEGGLSEHVIKKAFYATEEEFLNLVRQSWTAQPHIASVGSCCLLGAISNDDLYVANLGDSRAVLGRKALEGQVNCAPVVAERLSTDHNVGVEEVRKEVEALHPDDEDIVVHTHGVWRIKGIIRVSRSIGDVYLKKPDFDNNPLFRQFVCPVPLKRPVMTAEPSILTRKLRAEDMFLIFASDGLWEHLTDEAAVEIIFRSPRIGIAKRLIRAALEEAAKKREMRYEDLKGIEKGIRRYFHDDITVIVLYLDHSSQGSLNGRSRHQGVCDCIATPVDIFSLKADESNL. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02628 377 SUPERFAMILY PP2C-like 31 342 IPR036457 -
Seca9g02628 377 FunFam Probable protein phosphatase 2C 42 16 347 - -
Seca9g02628 377 ProSitePatterns PPM-type phosphatase domain signature. 51 59 IPR000222 GO:0043169
Seca9g02628 377 PANTHER PROTEIN PHOSPHATASE 26 338 IPR015655 GO:0004722|GO:0006470
Seca9g02628 377 SMART PP2C_4 15 338 IPR001932 -
Seca9g02628 377 CDD PP2Cc 32 340 IPR001932 -
Seca9g02628 377 Gene3D - 15 348 IPR036457 -
Seca9g02628 377 ProSiteProfiles PPM-type phosphatase domain profile. 25 340 IPR001932 -
Seca9g02628 377 Pfam Protein phosphatase 2C 48 309 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02628 Seca-Chr9 39499832 39503476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02628 8 350 PP2C-type Phosphatase Gene Family AT3G51370 51.282 2.64e-130 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02628 - K01102 gmx:100802394 580.867