Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02589 ATGGCCGTGGAACTTATGATGGGTTACAGGAATGACAATTTTGCGGCCAATTTCGAAGAGAATGCTGTTCAAGAAGCTGCCTCTGGGCTAGAGAGTGTGGAGAAGCTCATCAGGTTGCTATCACAGACTCAGCAACAACACAAGTCATCTCCAAAGTCTTCCATGGAAATTGAGTTGGACTATAAAGCTGTCGCTGACGTCGCTGTTTCAAAGTTCAAGAAGGTGATTTCACTTCTGGGTAGAACCAGAACCGGTCATGCTCGATTCAGAAGAGCCCCTTTGGTTCCTCCCTCTTCTTCTGTTAACCAAAACCTTGAAACACCTTGTGAACCCAGAGTCTATCATGCTACTCCGTTGCAGCAGATCCCACCACCAACCCTTCAAACACACAGTGAACATAATCACCCTTTGATCCCAAACAGAAAGGATTCCTCTAAGACCATTACTTTCTCCTATTCCTCTGCTGCCAATTCGTTCATGTCATCCCTCACCGGCGACGCTGACACCAAACACCCTTGTTCCTCGTCGCCGGCGACGCCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCGTCAGGAAAGCCTCCTCTTTCTTCGTGTTCTTTGAAGAGAAAGTGTAGCTCTGAGAACTTGGGTTCTGCCAAGTGCGGCAGTTCCTCCAGTCGCTGCCATTGTTCAAAGAAGAGCTGGTCTCGTTCTCAAGCGTTCTGTTTTGGATTGTTCTGTGGCAGCAGAAAAATGAGGTTGAAGAGAGTGGTGAGAGTACCAGCAATAAGCTTGAAGATGGCTGATATTCCACCTGATGATTATTCTTGGAGGAAATACGGACAGAAACCTATTAAAGGATCTCCTCATCCAAGGGGTTATTACAAGTGTAGCAGCGTGAGAGGGTGTCCAGCGCGGAAACACGTAGAGAGAGCTGTGGATGATCCATCTATGCTGGTAGTCACCTATGAAGGCGAGCACAATCACTCTCTCTCTGCAGCTGAACCCACTAATCTCATCCTAGAATCCTCTTAG 1020 0.4755 MAVELMMGYRNDNFAANFEENAVQEAASGLESVEKLIRLLSQTQQQHKSSPKSSMEIELDYKAVADVAVSKFKKVISLLGRTRTGHARFRRAPLVPPSSSVNQNLETPCEPRVYHATPLQQIPPPTLQTHSEHNHPLIPNRKDSSKTITFSYSSAANSFMSSLTGDADTKHPCSSSPATPFQITNLSQVSSSGKPPLSSCSLKRKCSSENLGSAKCGSSSSRCHCSKKSWSRSQAFCFGLFCGSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPSMLVVTYEGEHNHSLSAAEPTNLILESS. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02589 339 ProSiteProfiles WRKY domain profile. 261 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g02589 339 Gene3D WRKY domain 254 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca9g02589 339 FunFam WRKY transcription factor 65 250 327 - -
Seca9g02589 339 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 330 IPR044810 GO:0003700
Seca9g02589 339 Pfam WRKY DNA -binding domain 268 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g02589 339 Pfam Plant zinc cluster domain 245 264 IPR018872 -
Seca9g02589 339 SMART WRKY_cls 266 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca9g02589 339 SUPERFAMILY WRKY DNA-binding domain 263 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02589 Seca-Chr9 39061851 39063393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02589 19 330 WRKY Transcription Factor Family AT2G24570 43.939 4.94e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca9g02589 WRKY 3.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02589 - - gmx:100804089 461.84