Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02582 ATGGAGGGTGAAGGAAGAGGAGGAGGAGGAGGAGAGAGAGAGATGGGAACAAGGAAAAGAGGTGTGGTGGAAGGTGAGAGAAGGTACAAAGGAATAAGGATGAGAAAGTGGGGAAAGTGGGTTGCTGAAATTAGGGAACCTAATAAGCGTTCAAGGATTTGGTTGGGTTCTTATTCCACTCCTGTCGCCGCCGCTAGAGCCTACGACACCGCCGTTTTCTATCTCCGGGGACCCTCTGCACGTCTTAACTTCCCGGAGCTTCTCACCGGAGAAGCCCCCGCCGTACTCGCCGGTTGCGACATGTCGGCGGCTACTATCAGGAAGAAAGCCACCGAGGTCGGTGCTAGAGTTGATGCTCTTCAGGCTACCCTTCACCACCACCACCACCCTCGTGTGGCGCCGTCGCCGGAGCTTCTCTCAGGTGGAGGAGGCGGAGGGTCTGGGGATTTTGCGGAGCGGGTTGACCTGAACAAGATACCCGAACCTGAGAGTTCGGACTGTGACTGGGATGTGAATTGA 519 0.5588 MEGEGRGGGGGEREMGTRKRGVVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLTGEAPAVLAGCDMSAATIRKKATEVGARVDALQATLHHHHHPRVAPSPELLSGGGGGGSGDFAERVDLNKIPEPESSDCDWDVN. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02582 172 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Seca9g02582 172 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Seca9g02582 172 MobiDBLite consensus disorder prediction 126 172 - -
Seca9g02582 172 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Seca9g02582 172 MobiDBLite consensus disorder prediction 1 22 - -
Seca9g02582 172 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Seca9g02582 172 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Seca9g02582 172 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Seca9g02582 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 18 166 - -
Seca9g02582 172 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Seca9g02582 172 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Seca9g02582 172 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02582 Seca-Chr9 38992951 38993469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02582 16 170 AP2-EREBP Transcription Factor Family AT5G67190 57.865 3.79e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g02582 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02582 K09286 - gmx:100527066 249.98