Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02580 ATGTGGGATCTGAATGACTCACCCGATCAGAGAAAGGACTATGAATCTGAAGGATGTTCTTCTCTCAAGACTTCCATCGATGGAGATGATGATAAAGGCAAAACGCTTGGATCTGTTTCCAATTCAAGCTCCTCTGCCGTCGTCATAGAGGACGGATCCGAAGAAGAAGAAGAAGAAACCGCTGACAGAACCATGAAGAAAAGAAGCAGCAAGATTTTTGGCTTCTCTGTTCCTCATCACAAGGATGAGTCCGTGGATAGTGACCAACCACCCATCACCCACCAGTTTTTTCCGGTGGAGGATTCAGAGATGGCAGCACCCTCCGGTGGTGGTAGTGGTGGTGGAGCCTCTTCTTTTCCTCGAGCTCACTGGGTTGGTGTAAAATTTTGTCAATCAGAAACACTTGGTGGTGGTGGTGGAAAATCAGTGGAAGTTTCACAACCGATGAAGAAGAGTCGCCGAGGACCAAGGTCTCGAAGCTCACAGTATAGAGGAGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCCATTAAGTTCCGGGGAGTAGAGGCAGACATAAACTTCAACATAGAAGATTATGAAGAAGACTTGAAGCAGATGAGTAATTTAACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCTAGAGGAAGTTCCAAATATAGAGGAGTTACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTCTTAGGGAAAAAGTACGTTTATCTGGGTCTGTTTGACACTGAGATTGAAGCTGCAAGGGCGTATGACAAAGCGGCAATTAAATGCAATGGCAAAGAGGCTGTCACTAATTTTGACCCCAGCATTTATGAAAACGAGCTTAATTCTGAATCCTCCGGTAAAGCTGCTGATCACAATCTGGATTTGAGTTTGGGCAATTCGAGCTCTAAGCATAATAGCAATAGTCAAACAATGGGGAATGTCTCAAATGATCAGCATATGCTACCTGAATCTAATTGGAGGAATGGGGGAAGCAAGTCTAAGTTGGTGAATATACTACCAAAACCATGTAGTAGAGGTAACATGGAAGCTTATGGGCATGGGGAGAATGAAGCATTGAGAATGCTAAGCCAAACTCACCTTCAATCTCCAGCTACTAATGAAATGCATAGATATGGTCCATACAGCAGGTCGCCTGGAGAGCCTCAAATGCTTCAAAATTTTGCACATCTTCACCAACCAAAATTTCATGTGAGTACTATTGTTCAATTCATTAGCTATATTGCAGCAACAAGAAGCACCAATTTTATATATGTGTACATGTATATGCAGCTTCCAAGCAGCAGCAACAATGGAGGCCGTATTGGAAGTGATCTTTCATTGTCAATGTCGGATCAACAAGAGTGGCAACCAGGGCCTCCACCACATTTGTTAGCAAGTGCTGCAGCATCATCAGGATTCCCACCACAGATAAGACCCTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCCTGA 1608 0.4453 MWDLNDSPDQRKDYESEGCSSLKTSIDGDDDKGKTLGSVSNSSSSAVVIEDGSEEEEEETADRTMKKRSSKIFGFSVPHHKDESVDSDQPPITHQFFPVEDSEMAAPSGGGSGGGASSFPRAHWVGVKFCQSETLGGGGGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGKAADHNLDLSLGNSSSKHNSNSQTMGNVSNDQHMLPESNWRNGGSKSKLVNILPKPCSRGNMEAYGHGENEALRMLSQTHLQSPATNEMHRYGPYSRSPGEPQMLQNFAHLHQPKFHVSTIVQFISYIAATRSTNFIYVYMYMQLPSSSNNGGRIGSDLSLSMSDQQEWQPGPPPHLLASAAASSGFPPQIRPSQGWLQKNGFHTLMRPS. 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02580 535 MobiDBLite consensus disorder prediction 1 69 - -
Seca9g02580 535 PRINTS Ethylene responsive element binding protein signature 255 266 IPR001471 GO:0003700|GO:0006355
Seca9g02580 535 PRINTS Ethylene responsive element binding protein signature 293 313 IPR001471 GO:0003700|GO:0006355
Seca9g02580 535 SUPERFAMILY DNA-binding domain 253 313 IPR016177 GO:0003677
Seca9g02580 535 SMART rav1_2 162 224 IPR001471 GO:0003700|GO:0006355
Seca9g02580 535 SMART rav1_2 254 317 IPR001471 GO:0003700|GO:0006355
Seca9g02580 535 Pfam AP2 domain 253 302 IPR001471 GO:0003700|GO:0006355
Seca9g02580 535 Pfam AP2 domain 162 210 IPR001471 GO:0003700|GO:0006355
Seca9g02580 535 CDD AP2 162 219 IPR001471 GO:0003700|GO:0006355
Seca9g02580 535 ProSiteProfiles AP2/ERF domain profile. 162 218 IPR001471 GO:0003700|GO:0006355
Seca9g02580 535 MobiDBLite consensus disorder prediction 1 34 - -
Seca9g02580 535 SUPERFAMILY DNA-binding domain 161 219 IPR016177 GO:0003677
Seca9g02580 535 MobiDBLite consensus disorder prediction 481 518 - -
Seca9g02580 535 FunFam AP2-like ethylene-responsive transcription factor 161 220 - -
Seca9g02580 535 MobiDBLite consensus disorder prediction 135 163 - -
Seca9g02580 535 Gene3D AP2/ERF domain 161 220 IPR036955 GO:0003700|GO:0006355
Seca9g02580 535 Gene3D AP2/ERF domain 253 312 IPR036955 GO:0003700|GO:0006355
Seca9g02580 535 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 87 402 - -
Seca9g02580 535 MobiDBLite consensus disorder prediction 35 49 - -
Seca9g02580 535 FunFam AP2-like ethylene-responsive transcription factor 253 313 - -
Seca9g02580 535 CDD AP2 253 313 IPR001471 GO:0003700|GO:0006355
Seca9g02580 535 MobiDBLite consensus disorder prediction 321 371 - -
Seca9g02580 535 ProSiteProfiles AP2/ERF domain profile. 254 311 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02580 Seca-Chr9 38951474 38954280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02580 1 345 AP2-EREBP Transcription Factor Family AT4G36920 68.524 8.48e-139 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca9g02580 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02580 K09284 - gmx:100786333 781.171