Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02568 CCTCCCACTCACCTCACACTTCCTCTGCTATTCCCCTGTTTTTTCTCCAAGCCTCCTTCAATTCTCGCATCCATTCAATTCTCGTATCCAGGGCCATATCAATTGCGCAAGAACAATATGTCATCATCAATGGCTTGCCATTCCCTCAACATTGATATTGAAGAGATTCAAAGCCCCCAGTCCCACGTTTCTTCTGACCTTAACTCCACGAGTCCTCGTTCACCCACACCTTCGGAACATGAATGGGTTCCAAATTGTGTTGAAGAATTGAAGCCCAAGGTTGGGCAACAATTTGATACTTTAAAAGAAGGTGAAGAATTTTACAAAAGGTACGCACATAATGTTGGATTTAGTGTCCGTTGCTCATCGGAAACTAAAGATAAAAATGGTGTGAAGCGTTGGAAGTATTTTGTTTGCTCAAAAGAAGGTTACATACTAGATAAGGAAAAAGTTGGGGAACAAAGCAACTCAACTATTAAGTCTAGGAGAAGGAGTCTTACAAGAGAATGGTGCAATGCAAAGGCCGTTTTCAAATTGGTAGGGGAAGGTAAATATGAGCTCATTCGATTTCATGAAAGTCACACACATGTACTCGCTTCACCTATGAAGAGACAATTTCTAAGATCATCAAGAAAGGTAAATCCTGTTCATAAGAGTTTGTTGCATGCATATAATAGAGCAAATATTGGGCCTTCAAAAACATATCACTTGTTGAAAGAACAATTTGGGGGTTATGAAAATGTTGGGTGCACACAAAGGGATCTTCAAAATTATTCAAGAGATTTAAAGACCCTAATTAAAGATTCCGATGCACATGTTTTTATTGACAACTTTAGGAGGAAGCAAGAAATTAATCCATCATTCTACTATGCATATGAGGTGGATGAAGAAGGTAGACTAAAACATGTTTTCTGGGCGGATGGCATTTCTAGGAAAAATTATTCCTTATTTGGGGATCTTGTTTCATTTGATACTACATATGGAACAAACAAATATTCAATGATTTTTGCACCATTTACTGGAGTAAACCACCATAGGCAATGTGTTACGTTTGGTGCGGCTTTTTTAGCAGATGAGAAGGTTGAATCATTCATTTGGTTGTTTGAAAAATTTTTAGAAGCAATGGGGGGACATCAACCAAATCTTTTAATTACTGATCAAGATCCTGCCATGAAAATTGCTATAGAGAAGATTTTTAATTCTTCTGCTCATAGATTTTGTATGTGGCACATTATGAAGAAAGTTTCTGAAAAGGTAGGTGTGTCCTTGAATGCCGATAAGGAGTTCAATAGTGATTTCAAGTCATGTGTTTGGAGATCAGAGTCACCAGATGATTTTGAGGAAACATGGAAATCTATAATAATTAGGTTTAAATTAGAAAAGAATGATTGGCTCTCACATATGTATGATATTCGAAGCATGTGGATCCCCGCTTACTTTAAGGACATCTTTTTGTCTGGGGTATTGAGAACAACCTCAAGATCAGAAAGTGAGAATTCTTTTTATGGTAACTTTTTGAATCCTCATGTTAGCCTTGTTGAATTTTGGATGAGGTTTGATTCTGCAATAGAAGCACAAAGGCAGAAGGAGTTACTTGCTGATAATGATTCACTTCATTCTACACCAAAATTGAAGTTGGATCGCGATTTAGAGAAGCATGGAAGAAATGTTTATACTCATGAGAATTTATATATATTTCAGAATGAGTTATGGATTGCATGTTTAGATTGTGGAGTTGAAAATAAGAAAGAGGAAGATGGAAAAGAAGTATTGCATGTAATTGATAACAGTCAGGCTAATGGTAAAATACGAGAAGTGGTTTATAATCCTTCTGATCACAATGCAAATTGTTCATGCAACATGTCCCAATCTCTTGGCATACCTTGTAGACACATACTTTGTATTCTAAAAGGGAATGGTTTAAATAAAATACCAAGCAATTACATTGTGAATAGGTGGACTAAGTTGGCAAATAGAAAACCTATTTTTGATATTGCTAATGATGTCTTGGAAAGGTGTTCTAAACCAGAAAATGAGAGAAAGCTCATTTCAGATGCATGGGATAACTTTTTAAGGTGCATGGACAAAGCTGGACAAAGTAAAGAAAAATTGCTTGTTGTGATAAATGGAACCATTGACATTGAAAAGGAATTGACTGAGTTTGAAGGGGATTCTCAACAAAGTAAGACAAATAATTTACAGGCCTTTATTGGATCCAATATTCCTAAAGAAGTGGACATTCTTCCACCACAATTTTCAAAGACAAAGGGAAGCGGAAAACGAATCAAAGGAGGCAAAGAGAAGGCAATTCAGCAACAACAGAAAAGAACCAGGCTTTGTAAAGCATGCGGCCAACATGCATTTCATGACAGTCGCTTGGCTTTCATAACTCATAACTTTTATGTTGGTTTCCACTTGCCTAATGTCTCCTCAGTTGTTGGTTTCCACTTGCCTAATGTCTCCTCAGTTAGGATCCCACAGTTGAAATTGTCAGACTACTTTGTATTCAATTTCCTGTACAAATTATGGAGCTAG 2535 0.368 PPTHLTLPLLFPCFFSKPPSILASIQFSYPGPYQLRKNNMSSSMACHSLNIDIEEIQSPQSHVSSDLNSTSPRSPTPSEHEWVPNCVEELKPKVGQQFDTLKEGEEFYKRYAHNVGFSVRCSSETKDKNGVKRWKYFVCSKEGYILDKEKVGEQSNSTIKSRRRSLTREWCNAKAVFKLVGEGKYELIRFHESHTHVLASPMKRQFLRSSRKVNPVHKSLLHAYNRANIGPSKTYHLLKEQFGGYENVGCTQRDLQNYSRDLKTLIKDSDAHVFIDNFRRKQEINPSFYYAYEVDEEGRLKHVFWADGISRKNYSLFGDLVSFDTTYGTNKYSMIFAPFTGVNHHRQCVTFGAAFLADEKVESFIWLFEKFLEAMGGHQPNLLITDQDPAMKIAIEKIFNSSAHRFCMWHIMKKVSEKVGVSLNADKEFNSDFKSCVWRSESPDDFEETWKSIIIRFKLEKNDWLSHMYDIRSMWIPAYFKDIFLSGVLRTTSRSESENSFYGNFLNPHVSLVEFWMRFDSAIEAQRQKELLADNDSLHSTPKLKLDRDLEKHGRNVYTHENLYIFQNELWIACLDCGVENKKEEDGKEVLHVIDNSQANGKIREVVYNPSDHNANCSCNMSQSLGIPCRHILCILKGNGLNKIPSNYIVNRWTKLANRKPIFDIANDVLERCSKPENERKLISDAWDNFLRCMDKAGQSKEKLLVVINGTIDIEKELTEFEGDSQQSKTNNLQAFIGSNIPKEVDILPPQFSKTKGSGKRIKGGKEKAIQQQQKRTRLCKACGQHAFHDSRLAFITHNFYVGFHLPNVSSVVGFHLPNVSSVRIPQLKLSDYFVFNFLYKLWS. 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02568 844 MobiDBLite consensus disorder prediction 60 78 - -
Seca9g02568 844 Pfam FAR1 DNA-binding domain 106 198 IPR004330 -
Seca9g02568 844 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 88 699 IPR031052 GO:0006355
Seca9g02568 844 ProSiteProfiles Zinc finger SWIM-type profile. 604 640 IPR007527 GO:0008270
Seca9g02568 844 Pfam MULE transposase domain 321 414 IPR018289 -
Seca9g02568 844 Pfam SWIM zinc finger 615 633 IPR007527 GO:0008270
Seca9g02568 844 SMART 26again6 615 642 IPR006564 GO:0008270
Seca9g02568 844 MobiDBLite consensus disorder prediction 60 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02568 Seca-Chr9 38815728 38819216 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g02568 MULE 1.3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02568 - - mtr:112420857 1099.35