Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02565 ATGGGGGATAATATGTACCACTTTGACAAAAACCTCTCTTCCTCACAAGACGAAATCTCCCTTTTTCTTCGTCAGATTCTCCTCCGTTCATCCTCTTCTTCCTCCATGCCTGGATCCAACCAAGGCATCAATGCACCACCACCGCTTCAAGATGGGAAGATCTCGACCCTTGATTCCACCCCTTCAATGGCTCACGCTGCAAATGTGTCTTCCTCCTCTCTAGGAGTGAGTGAGAATGAGACTGATGACTACGACTGTGAAAGTGAGGAGGGTTTTGAAGCATTGGCCGAAGAAGTTCGGACAAGATCTGTGCCTACAAGGAGTTCATCAAAAAGAAGCAGAGCAGCAGAAGTCCATAATTTGTCTGAAAAGCGAAGAAGAAGCAGGATCAACGAGAAAATGAAGGCTTTGCAAAATCTAATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGATTGAGTTTGCATCCTATGTGCTTCCCTGAAGGGTTGCAGCCTCTGCAATTTTCTCGGATGTGTATGGAATTAAATGAAGGAAACAGGTCTACCCCTTTAAACATGACAGGCACAGCCACTCTGCCTCTGCACCAAGATAACCCCTTGCACTATGGATCCAATCTACCTAACAAACAAACTCTGCCAAATCAGCAGCCATCATCAACACCCTATCCTTCATATATTAACAACTCAGAAACTTCATTTGGGCTGGAATCCAGAATTCCAGCGCATATAAAACCTCTTCAACCTAGAGGATCTTCCGAGGTAAGCTCATTGTGTGTGTTTGGTTTACTGTAA 864 0.4398 MGDNMYHFDKNLSSSQDEISLFLRQILLRSSSSSSMPGSNQGINAPPPLQDGKISTLDSTPSMAHAANVSSSSLGVSENETDDYDCESEEGFEALAEEVRTRSVPTRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFPEGLQPLQFSRMCMELNEGNRSTPLNMTGTATLPLHQDNPLHYGSNLPNKQTLPNQQPSSTPYPSYINNSETSFGLESRIPAHIKPLQPRGSSEVSSLCVFGLL. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02565 287 MobiDBLite consensus disorder prediction 31 46 - -
Seca9g02565 287 MobiDBLite consensus disorder prediction 53 79 - -
Seca9g02565 287 Gene3D - 109 173 IPR036638 GO:0046983
Seca9g02565 287 Coils Coil 153 173 - -
Seca9g02565 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
Seca9g02565 287 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 277 IPR031066 -
Seca9g02565 287 MobiDBLite consensus disorder prediction 31 83 - -
Seca9g02565 287 MobiDBLite consensus disorder prediction 225 251 - -
Seca9g02565 287 FunFam Basic helix-loop-helix transcription factor 109 172 - -
Seca9g02565 287 MobiDBLite consensus disorder prediction 100 125 - -
Seca9g02565 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 174 IPR036638 GO:0046983
Seca9g02565 287 Pfam Helix-loop-helix DNA-binding domain 118 164 IPR011598 GO:0046983
Seca9g02565 287 SMART finulus 120 169 IPR011598 GO:0046983
Seca9g02565 287 CDD bHLH_AtPIF_like 114 176 IPR047265 -
Seca9g02565 287 MobiDBLite consensus disorder prediction 218 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02565 Seca-Chr9 38790525 38794208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02565 79 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 52.821 6.50e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g02565 HLH 2.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02565 - - vum:124831111 352.829