Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02561 ATGGCGGATGATGAAGGAAGTGCATCCAGGAAGCGAAGGACCAGAGGACCTGAGGCCACCGCCCGCAGCCAAGCCTTGGAGCGCCTCAAGGCCCGCCTTGGTGGTGGTCGCAGATCTGACCCTGACGGACCCCAAATCAGGTTAGAAAACCCTGTCTATGATACAGTTCCCGAGGACGAGTACAACGCCCTCGTTGCCAAGCGCCGCGAACAAGCACGCTCCTTCATCGTCGACGATGACGGTCTCGGTTACGGTGACGAAGGCGAGGAAGAGGATTGGTCCAAAGCTGGCTTCACCCTCTCCTCCGACGAATCCGACGGCGAATCGACGAAGCCCAAGCGGAAAAAAGATCCTCAGCCAAAACGGCCATCTTCTTCCTCTTCTGCGCTCTCAGCCGCCGCCGCCATGATGGGCGCGCAGAGGTTGTCGTCCATGTTTACTTCCGCAGTTTTCAAGAAAAGCAGGGACGATAAGACCTGTGACAGCATCGTCGATGATGTTATCGCGGAGTTCGCGCCGGATGAGACCGATAGACTGAGTCGGAGAAGGCTTCAAGTGGATTCGTCGTCTGGCGCCAACGACGCTCATCCGATTAAGCCATCTGTTGGTGATTCTATCGGAGGTTCTTCGCTGTCCAAAGCTTTTGCAAATGGTGACGCTGAACCGGTTAGGGTTTTTCAGAACAATGGATGCGACTTGGGCTTAGAGCAAAAGTGCGAAGCGGAAGTGAATGGAAATGGAAGTTCGGAAAATGGTCAGGTACCAATAATACAATCTAATGACTGCCCAAGTAATGAGGATTTAGTTGAGGAGAAAGTGGCGAAGGACGTTGAAATAGAAGTGAAACAAGATATGAAAAAGGAAGTGTTCACTTTGAATGCCAAAGTTACAAAAGAGGAGGAGGATCCAGCATTGTGTGCGACTGCTGGTTGGCAAGCAGCGAAGAGTGTTGCTGGCGGAGGAGTGGAGATCAGCGTTGCTGATTCGAAGGATGATTCACATAGCCAACAACACTCTGAGTTTAATCTGGAGACAGATGGATCGCTGCCTTTCTACATTCTAGATGCCCACGAGGAGTATTATGGAGCCAATATGGGAACGCTTTATTTGTTCGGGAAGGTCAAAACAGGGAATTCGTATCAGAGTTGCTGTGTTGTTGTGAAGAACATGCAGAGGTGTGTATATGCAATTCCAAGTCGCCCTTTGCATTACACTGATGAGATCGTGAATCTTGAGAAAGATGTCCAAGAGTCTCGAATTTCTCCTCAAGATTTCCGTAAAAAGCTGCATGACGTGGTATCTGATATAAAGAATGAGATAGCAAAGCATCTGGTGGATCTGAGCGTTTCTACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAACGGTCTGAAATTCCTACCGGTGAAAATTATGTGGTGAAAATAAATTACCCATTCAAGGATCCAGTACTTCCAGTAGACCTCAAAGGAGAAAGTTTCTGTGCTCTCGTAGGAACTCGTTGCAGTGCACTCGAGCTTTTTCTGATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAACTTTTCTACCCGCTCAGCTTCTCAAAGGGTGAGACTTGTTAGCTGGTGCAAATTTGAAGTGACTGTCGACACTCCTAAAGACATAAGGATTTCTTCAAATTCCTCAAAATTCACTTTCGAGATTCCTCCTGTGGTTGTCACGGCGATAAGCTTGAAAACCACCATAAATGAAAAACAGAACATAAATGAAATTGTATCAGCATCAGTTGTCTGTTGCAATATGGTTAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAGAGACCTGGAATGCTGACCCATTTTACTGTTATTCGTAAGCTTGATGGGAATATATTTCCACTGGGATTCAGTAAGGAGGCTACGGACAGAAACATAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGATTATGTTATCTAGAAAAGGTAAAAAAATTATATGCTGCTTCTAGGATTGACCTTTTTATTTACTTTGTTTTCAGTGAAAGAGCTTTGTTAAATCGTCTGATGTTAGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACTTGGATGTTCTTCTCCACAGATCCCAGGCTTGCAAAGTACCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACCGTTCTACAATGCCTAAACTTGATAGAAGAAGCAAAGTTTTTGGTTCTGGAGCTGATCCTGGTATCATGTCTTGCATTGCTGGTCGGCTTCTTTGTGATACATATTTGTGTTCTCGTGACCTATTAAAGGAGGTTAGTTATGCTTTAACTCACCTCGCAAAAACACAGCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGACGTTCCAAAAATGTTCCAAACAACAAAATCTCTAATGGAGCTTATTGAATATGGTGAAACGGATGCCTGGTTGTCTATGGAACTCATGTTTCATCTGAGTGTTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGTAATTTGTGGGGAAAAACTCTTCAGGGTGCTCGGGCACAGAGAGTAGAATATTTATTATTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGTTTACAAATCATGCAAAAGAAACAAAATTGACCAAACGCAGAGTACATGGTGTTGACGATAGCAACTTTGATGAAGCAGAAATTGATGATGCAAACTACAATAATGATGCTTCTGAACGTGATCATAAGAAAAACAAAAAGGCTTCTTCCTATGCCGGGGGACTGGTTTTAGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGATTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTTCCGACGGATCTTTTCCTCGTCTACCATCTAGTAAAATAACTGGAGTCTTGCCAGAGTTGCTGAAAAATCTGGTGGAAAGGAGGAGAAAGGTAAAGTCATGGATGAAGACGGCATCTGGTCTTAAAGTTCAGCAGCTGGACATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGCATGTATGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCGAAACCACTAGCCGAGCTCATAACCCAACAAGGAAGGGAGATATTGCAGAGTACTGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCAAAAGCAAAGGCAATGGCTGGGAAAGTTATTCAAGAGGTCAATAAGAAATATAGATGCTTGGAAATTGATCTTGACGGTTTGTATAAGAGGATGCTACTTCTCAAGAAAAAGAAATATGCAGCTGTAAAGGTGCAGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGCAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTGGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCAGGAGGGTCATGTGAAGATGTTGTTGAATCAATTCACAGCTCTCTCATGAAGGTGCAAGAAGAAATGAGGAACGGACAAGTACCATTGGAAAAATATGTCATCACAAAGACATTAACTAAACCTCCTGATGCATATCCTGATGCCAAAAACCAGCCCCATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCCTCTGGTTGCTCTGTTGGTGATACGATCCCTTATATAATTTGCTATGAGCAGGGTGGTAGTTCAGGCAGTGCAACAGGCATTGCCCAGCGTGCTAGACATCCTGATGAACTAAAACGAGAACAGGGGACATGGCTAATTGACATTGATTACTATTTGTCACAACAGATTCATCCTGTGGTATCACGTCTTTGTGCATCAATTCAAGGCACAAGCCCAGAAAGACTGGCTGATTGTTTAGGGCTTGATGCCTCAAAGTTTCGACTTAAATCAAGTGAAGCTTCAAGTGGTGATCCTATGAGCTCACTCTTGTTTGCTGTTGATGATGAGGAGAGGTATAGGGGATGTGAGCCGTTGGTCTTGTCATGCCCCAGCTGCTCTGGAACCTTTGACTGCCCACCTGTGTTTAAATCTATTTGTTCATTGGGAAGTGAAAAGCCAACCAGCTCAGGCACCGAGGAATCTGACTACAACTTCTGGAGTAAGCTGCACTGTCCTAAATGCCCGGAAAATGTTGTTGGTAGAATATCTCCTGCAATGATAGCTAATCAGGTCAAAAGGCAAGCAGAGAAGTTTGTTTTCATGTATTATAGAGGTTTACTAATGGTAAGTCATCTGTCTATAGTATACTACGAGTATCAATAG 4386 0.4334 MADDEGSASRKRRTRGPEATARSQALERLKARLGGGRRSDPDGPQIRLENPVYDTVPEDEYNALVAKRREQARSFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESDGESTKPKRKKDPQPKRPSSSSSALSAAAAMMGAQRLSSMFTSAVFKKSRDDKTCDSIVDDVIAEFAPDETDRLSRRRLQVDSSSGANDAHPIKPSVGDSIGGSSLSKAFANGDAEPVRVFQNNGCDLGLEQKCEAEVNGNGSSENGQVPIIQSNDCPSNEDLVEEKVAKDVEIEVKQDMKKEVFTLNAKVTKEEEDPALCATAGWQAAKSVAGGGVEISVADSKDDSHSQQHSEFNLETDGSLPFYILDAHEEYYGANMGTLYLFGKVKTGNSYQSCCVVVKNMQRCVYAIPSRPLHYTDEIVNLEKDVQESRISPQDFRKKLHDVVSDIKNEIAKHLVDLSVSTFSMAPVKRKYAFERSEIPTGENYVVKINYPFKDPVLPVDLKGESFCALVGTRCSALELFLIKRKIKGPSWLQVSNFSTRSASQRVRLVSWCKFEVTVDTPKDIRISSNSSKFTFEIPPVVVTAISLKTTINEKQNINEIVSASVVCCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPLGFSKEATDRNIKAGSNVLCVESRLCYLEKVKKLYAASRIDLFIYFVFSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKLGRLNRSTMPKLDRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYALTHLAKTQLNKFRKEVAPHDVPKMFQTTKSLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTNHAKETKLTKRRVHGVDDSNFDEAEIDDANYNNDASERDHKKNKKASSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPRLPSSKITGVLPELLKNLVERRRKVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSSLMKVQEEMRNGQVPLEKYVITKTLTKPPDAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSATGIAQRARHPDELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDASKFRLKSSEASSGDPMSSLLFAVDDEERYRGCEPLVLSCPSCSGTFDCPPVFKSICSLGSEKPTSSGTEESDYNFWSKLHCPKCPENVVGRISPAMIANQVKRQAEKFVFMYYRGLLMVSHLSIVYYEYQ. 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02561 1461 PRINTS DNA-directed DNA-polymerase family B signature 951 964 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca9g02561 1461 PRINTS DNA-directed DNA-polymerase family B signature 1027 1039 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca9g02561 1461 PRINTS DNA-directed DNA-polymerase family B signature 1080 1088 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca9g02561 1461 FunFam DNA polymerase 1158 1344 - -
Seca9g02561 1461 SUPERFAMILY DNA/RNA polymerases 877 1329 IPR043502 -
Seca9g02561 1461 Gene3D - 351 553 - -
Seca9g02561 1461 CDD DNA_polB_alpha_exo 568 844 - -
Seca9g02561 1461 Gene3D - 568 905 IPR036397 GO:0003676
Seca9g02561 1461 Pfam DNA polymerase family B, exonuclease domain 380 786 IPR006133 -
Seca9g02561 1461 Gene3D - 391 517 - -
Seca9g02561 1461 MobiDBLite consensus disorder prediction 1 58 - -
Seca9g02561 1461 FunFam DNA polymerase 391 517 - -
Seca9g02561 1461 ProSitePatterns DNA polymerase family B signature. 1082 1090 IPR017964 GO:0000166|GO:0003676
Seca9g02561 1461 MobiDBLite consensus disorder prediction 1 18 - -
Seca9g02561 1461 MobiDBLite consensus disorder prediction 106 121 - -
Seca9g02561 1461 FunFam DNA polymerase 992 1041 - -
Seca9g02561 1461 Coils Coil 1108 1128 - -
Seca9g02561 1461 MobiDBLite consensus disorder prediction 180 205 - -
Seca9g02561 1461 Pfam DNA Polymerase alpha zinc finger 1354 1449 IPR015088 GO:0003887|GO:0006260
Seca9g02561 1461 Gene3D Palm domain of DNA polymerase 933 1138 IPR023211 -
Seca9g02561 1461 Gene3D DNA Polymerase alpha, zinc finger 1347 1452 IPR038256 -
Seca9g02561 1461 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 18 1450 - -
Seca9g02561 1461 Pfam DNA polymerase family B 852 1314 IPR006134 GO:0000166|GO:0003677
Seca9g02561 1461 Gene3D - 1158 1343 IPR042087 -
Seca9g02561 1461 SUPERFAMILY Ribonuclease H-like 346 881 IPR012337 -
Seca9g02561 1461 FunFam DNA polymerase 661 906 - -
Seca9g02561 1461 Gene3D Helix hairpin bin 992 1043 - -
Seca9g02561 1461 MobiDBLite consensus disorder prediction 244 263 - -
Seca9g02561 1461 SMART polmehr3 568 1094 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca9g02561 1461 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Seca9g02561 1461 NCBIfam DNA polymerase (pol2) 671 1312 - -
Seca9g02561 1461 CDD POLBc_alpha 927 1330 IPR045846 GO:0003887|GO:1902975
Seca9g02561 1461 MobiDBLite consensus disorder prediction 75 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02561 Seca-Chr9 38759723 38772542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02561 1 1449 Core DNA Replication Machinery Family AT5G67100 59.470 0.0 1696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02561 K02320 - gmx:100798779 2118.2